View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_178 (Length: 250)
Name: NF6863A_low_178
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_178 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 29177490 - 29177727
Alignment:
| Q |
8 |
agcagagatacggtgtttgaaggcacagattacaagttatcactgccttttcctaatgattacccttttaaggctcccaaagtcaagtttgcaactacct |
107 |
Q |
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| T |
29177490 |
agcaaagatacagtgtttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactacct |
29177589 |
T |
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| Q |
108 |
gcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcatgagcaattgttg |
207 |
Q |
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| T |
29177590 |
gcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcctgagcaattgttg |
29177689 |
T |
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| Q |
208 |
ttgaccttgttttggcatgccatactgaccttatttgt |
245 |
Q |
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| T |
29177690 |
ttgaccttgttttggcatgccatactgaccttatttgt |
29177727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 2055676 - 2055533
Alignment:
| Q |
23 |
tttgaaggcacagattacaagttatcactgccttttcctaatgattacccttttaaggctcccaaagtcaagtttgcaactacctgcttccatcccaatg |
122 |
Q |
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| T |
2055676 |
tttgaaggaacagaatacagattgtcactttcatttcccaatgagtatccttttaaggccccaaaggtcaaatttgacaccacatgcttccaccccaatg |
2055577 |
T |
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| Q |
123 |
ttgatcttcatggcaacatatgcttggacatacttcaggtaatg |
166 |
Q |
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| T |
2055576 |
ttgatttgcatggcaatatttgcttggacattcttcaggtaatg |
2055533 |
T |
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