View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_182 (Length: 249)
Name: NF6863A_low_182
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_182 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 38867538 - 38867302
Alignment:
| Q |
1 |
gatattataaactttgattggtcatcgggtgaaacaaggtctaagtgattattcaatttttagagaacaaatgtgatatattccacattttttagaggac |
100 |
Q |
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| T |
38867538 |
gatatgataaactttgattggtcatcgggtgaaacaaggtctaagtgattattcaatttttagagaacaaatgtgatatattccacattttttagaggac |
38867439 |
T |
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| Q |
101 |
aaaatatcaaagaaattattagttgtttgtttgatatattccaacaattttgaatattgtgatgcatgaataatcactgatatgaactgagtgactcaat |
200 |
Q |
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| T |
38867438 |
aaaatatcaaagaaattattagttgtttgtttgatatattccaacaattttgaatattgtgatgcatgaataatcattgatatgaactgagtgactcaat |
38867339 |
T |
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| Q |
201 |
aatgcattcttttttgccaattgtcatttgacatatt |
237 |
Q |
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| T |
38867338 |
aatgcattcttttttgccaattgtcatttgacatatt |
38867302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 38805639 - 38805746
Alignment:
| Q |
130 |
tttgatatattccaacaattttgaatattgtgatgcatgaataatcactgatatgaactgagtgactcaataatgcattcttttttgccaattgtcattt |
229 |
Q |
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| T |
38805639 |
tttgatatattccaacaattttgaatattgtaatgcatgaataatctttgatgtgaactgagtgactcaatagtgcattcttttttgccaattgtcattt |
38805738 |
T |
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| Q |
230 |
gacatatt |
237 |
Q |
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| T |
38805739 |
gacatatt |
38805746 |
T |
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