View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_183 (Length: 249)

Name: NF6863A_low_183
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_183
NF6863A_low_183
[»] chr1 (8 HSPs)
chr1 (8-152)||(13244107-13244251)
chr1 (157-249)||(13244450-13244542)
chr1 (151-247)||(13080788-13080884)
chr1 (83-152)||(12963575-12963644)
chr1 (78-145)||(19278827-19278894)
chr1 (149-194)||(19279089-19279134)
chr1 (8-87)||(19278730-19278809)
chr1 (150-194)||(12963797-12963841)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  8 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttatt 107  Q
    |||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  108 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 152  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 13244450 - 13244542
Alignment:
Q  157 ttgataagcttgtttaccttcatggagccatatgtgaacacttcaggctatttcctcctctggcatttcagcaccagtgtgctatcaaatctg 249  Q
    ||||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||||||||||| |||| |||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctg 13244542  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 13080788 - 13080884
Alignment:
Q  151 aagagcttgataagcttgtttaccttcatggagccatatgtgaacacttcaggctatttcctcctctggcatttcagcaccagtgtgctatcaaatc 247  Q
    |||||||||||||||| |||||||||||||||||||||||||||  ||| ||||||| |||| || | |||||||||||| ||||||||||||||||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatc 13080884  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  83 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 152  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  78 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 145  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 19279089 - 19279134
Alignment:
Q  149 gaaagagcttgataagcttgtttaccttcatggagccatatgtgaa 194  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||    
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaa 19279134  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 19278730 - 19278809
Alignment:
Q  8 gagatgaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 87  Q
    |||| |||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 12963797 - 12963841
Alignment:
Q  150 aaagagcttgataagcttgtttaccttcatggagccatatgtgaa 194  Q
    |||| |||||||||||||||||| ||||||||||| || ||||||    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaa 12963841  T

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