View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_189 (Length: 249)
Name: NF6863A_low_189
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_189 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 31008976 - 31008738
Alignment:
| Q |
1 |
tcaagagttatagagtggagattttgtttggatcgtgagattttgtggtttttcttttacatcttgagggttttcaatgttaaaatatttggtttcactc |
100 |
Q |
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| T |
31008976 |
tcaagagttatagagtggagattttgtttggatcgtgagattttgtggtttttcttttacatcttgagggttttcaatgttaaaatatttggtttcactc |
31008877 |
T |
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| Q |
101 |
ttttcttttccccattgcctatcttatcacatggaaaaagaaattggttctactatttcacaacattaatttaatacaaatgaatgtgttttattacaga |
200 |
Q |
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| T |
31008876 |
ttttcttttccccattgcctatcttatcacatggaaaaagaaattggttctactatttcacaacattaacttaatacaaatgaatgtgttttattacaga |
31008777 |
T |
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| Q |
201 |
tgtgtcatgttctataattttttaaattggctatattct |
239 |
Q |
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| T |
31008776 |
tgtatcatgttctataattttttaaattggccatattct |
31008738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 31 - 239
Target Start/End: Complemental strand, 31186561 - 31186358
Alignment:
| Q |
31 |
gatcgtgagattttgtggtttttcttttacatcttgagggttttcaatgttaaaatatttggtttcactcttt-----tcttttccccattgcctatctt |
125 |
Q |
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|||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |
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| T |
31186561 |
gatcgtaagatcttatggtttttcttttacatcttgagggttttcaatgttaaaatatttggtttcactcttttttcattttttttccattgcctatctt |
31186462 |
T |
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| Q |
126 |
atcacatggaaaaagaaattggttctactatttcacaacattaatttaatacaaatg--aatgtgttttattacagatgtgtcatgttctataatttttt |
223 |
Q |
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| T |
31186461 |
atcacatggaaaaagaaatttgttctactatt------------tttgatacaaatgaaaatgtgttttatcacagatgtgtcatgttctataatatttt |
31186374 |
T |
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| Q |
224 |
aaattggctatattct |
239 |
Q |
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| T |
31186373 |
aaattggctatattct |
31186358 |
T |
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