View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_190 (Length: 248)
Name: NF6863A_low_190
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_190 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 44648716 - 44648948
Alignment:
| Q |
1 |
gctgtttcaaatgtgcctaaccacaccctccttttcctattcataccaccatataaaatataataactcaactaagacataaaaatataaatgaaattta |
100 |
Q |
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| T |
44648716 |
gctgtttcaaatgttcctaaccacaccctccttttcctattcataccaccatataaaatataataactcaactaagacataaaaatataaatgaaattta |
44648815 |
T |
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| Q |
101 |
catacataaccaaattataaactgaaaatgcgtgcatgtttggattgatgatgaatttagcagaattatgatgtgtcatgtggttttgcaaaaactacac |
200 |
Q |
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| T |
44648816 |
catacataaccaaattataaactgaaaatgcgtgcatgtttggattgatgatgaatttagcagaattataatgtgtcatgtggttttgcaaaaactacac |
44648915 |
T |
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| Q |
201 |
tagctttaataaaatcataatatcacgtctgat |
233 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
44648916 |
tagctttaataaaatcatagtatcacgtctgat |
44648948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2428709 - 2428749
Alignment:
| Q |
1 |
gctgtttcaaatgtgcctaaccacaccctccttttcctatt |
41 |
Q |
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| T |
2428709 |
gctgtctcaaatgttcctaaccaaaccctccttttcctatt |
2428749 |
T |
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