View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6863A_low_195 (Length: 248)
Name: NF6863A_low_195
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_195 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 10935295 - 10935174
Alignment:
| Q |
15 |
tatcattagagagaaagttggaatagctcccattgtagaaaatatgctagtgttttgttt-aggtgatttagacatgaaggaaatatttgtagaagcata |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10935295 |
tatcattaaagagaaagttggaatagctcccattgtagaaaagatgctagtgttttgttttaggtgatttagacatgaaggaaatatttgtagaagcata |
10935196 |
T |
|
| Q |
114 |
tgtaatctttaaaatgttataa |
135 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10935195 |
tgtaatctttaaaatgttataa |
10935174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 10922706 - 10922626
Alignment:
| Q |
132 |
ataacattaacacatagaaaacacctataataagacattcatgttacgatcactgcaatgaacgaggccggctttgattta |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10922706 |
ataacattaacacatagaaaacacttataataagacattcatgttacgatcactgcaatgaacgtggccggctttgattta |
10922626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 10959778 - 10959734
Alignment:
| Q |
72 |
tttaggtgatttagacatgaaggaaatatttgtagaagcatatgt |
116 |
Q |
| |
|
||||||||||||| ||||| |||||| | |||||||||||||||| |
|
|
| T |
10959778 |
tttaggtgatttatacatgtaggaaagacttgtagaagcatatgt |
10959734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 45407654 - 45407596
Alignment:
| Q |
151 |
aacacctataataagacattcatgttacgatcactgcaatgaacgaggccggctttgat |
209 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
45407654 |
aacacttataataagacattcatgttacgattactgcaatgaacatggccggctttgat |
45407596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University