View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6863A_low_2 (Length: 877)
Name: NF6863A_low_2
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 778; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 10 - 856
Target Start/End: Original strand, 11821182 - 11822028
Alignment:
| Q |
10 |
ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821182 |
ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta |
11821281 |
T |
|
| Q |
110 |
agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtcttatactgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821282 |
agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtcttatactgt |
11821381 |
T |
|
| Q |
210 |
taaattagtagcggttcctgaaaccgttactgtttttcgtattgagaaaactttggaacagaatgctactgatcttgttgttcaatggcaacaagttgcg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821382 |
taaattagtagcggttcctgaaaccgttactgtttttcgtattgagaaaactttggaacagaatgctactgatcttgttgttcaatggcaacaagttgcg |
11821481 |
T |
|
| Q |
310 |
ccgacaacggataataggcnnnnnnngaggcttcttttgcaacctataacttctaaggttgttaaaggaacaaaaactattagagcttctgttgttgcta |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821482 |
ccgacaacggataataggctttttatgaggcttcttttgcaacctataacttctaaggttgttaaaggaacaaaaactattagagcttctgttgttgcta |
11821581 |
T |
|
| Q |
410 |
tgttcctcggccctgccgaggaactagtagggattttagggaaacaatttccacttttgggattgaagaaaacagattgtattgaattgagttggattaa |
509 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821582 |
tgttcctcggcagggccgaggaactagtagggattttagggaaacagtttccacttttgggattgaagaaaacagattgtattgaattgagttggattaa |
11821681 |
T |
|
| Q |
510 |
ttctgttatatggtataatgacgctgatgattttaacaaaggcgcgaaaccggagagtcttttggataggaatcttaattccgcgacattcggtaagaga |
609 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
11821682 |
ttctgttatatggtataatgatgctgatgattttaacaaaggtgcgaaaccggagagtcttttggataggaatcttaattccgcggctttcggtaagagg |
11821781 |
T |
|
| Q |
610 |
aaatctgattatgttcagaaagctatttcaaaagatgatttggaagggatttggaaaaagatgattgagttgggaaaagttggatttgttttcaaccctt |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821782 |
aaatctgattatgttcagaaagctatttcaaaagatgatttggaagggatatggaaaaagatgattgagttgggaaaagttggatttgttttcaaccctt |
11821881 |
T |
|
| Q |
710 |
atggtggaaaaatggctcagattccggccgatgcaacgccatttcctcaccgtgccggaaatttgttcaaaattcaattctcagtgaattggaatgatcc |
809 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821882 |
atggtggaaaaatggctgagattccggccgatgcaacgccatttcctcaccgtgccgggaatttgttcaaaattcaattctcagtgaattggaatgatcc |
11821981 |
T |
|
| Q |
810 |
agcacctaatgcaacagttggttttttgaatcaagctaaggtacttt |
856 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11821982 |
agcacctaatgcaacagttggttttttgaatcaagctaaggtacttt |
11822028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 10 - 855
Target Start/End: Complemental strand, 11835182 - 11834337
Alignment:
| Q |
10 |
ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11835182 |
ggtgttggtggtcacgtcagtggtggagggtatggtgcaatgttgagaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta |
11835083 |
T |
|
| Q |
110 |
agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtcttatactgt |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
11835082 |
agggaaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatacgaggcggtggtggtgctagttttggtgttgttctgtcttataccat |
11834983 |
T |
|
| Q |
210 |
taaattagtagcggttcctgaaaccgttactgtttttcgtattgagaaaactttggaacagaatgctactgatcttgttgttcaatggcaacaagttgcg |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11834982 |
taaattagtagcggttcctaaaaccgttactgttttccgaattgagaaaacattggaacagaatgcaactgatcttgttgttcaatggcaacaagttgct |
11834883 |
T |
|
| Q |
310 |
ccgacaacggataataggcnnnnnnngaggcttcttttgcaacctataacttctaaggttgttaaaggaacaaaaactattagagcttctgttgttgcta |
409 |
Q |
| |
|
|| ||||| ||||||||| |||||||||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11834882 |
ccaacaactgataataggattttcatgaggcttcttttgcaacctaaatcttctacggttgtcaaaggaacaaaaactattagagcttctgttgttgcat |
11834783 |
T |
|
| Q |
410 |
tgttcctcggccctgccgaggaactagtagggattttagggaaacaatttccacttttgggattgaagaaaacagattgtattgaattgagttggattaa |
509 |
Q |
| |
|
|||| || |||| || || || ||||| |||||||||||| ||||||||| ||| || |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11834782 |
tgtttctaggccgcgctgacgaggtagtaaagattttagggaaggaatttccacgtttaggtttgaagaaaaaagattgtattgaattgagttggattaa |
11834683 |
T |
|
| Q |
510 |
ttctgttatatggtataatgacgctga--tga-ttttaacaaaggcgcgaaaccggagagtcttttggataggaatcttaattccgcgacattcggtaag |
606 |
Q |
| |
|
||||||| ||||||||| ||| ||| ||| | |||| || ||| |||||||| || |||||||||||||||| ||||||| ||| || |||||| |
|
|
| T |
11834682 |
ttctgttctatggtata---acgatgaattgagtcttaaaaatggcaagaaaccggtgaatcttttggataggaatgttaattcggcgggtttaggtaag |
11834586 |
T |
|
| Q |
607 |
agaaaatctgattatgttcagaaagctatttcaaaagatgatttggaagggatttggaaaaagatgattgagttgggaaaagttggatttgttttcaacc |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
11834585 |
agaaaatctgattatgttcagaaagctatttcaaaagatgatttggaagggatatggaaaaagatgattgagttaggaaaaattggatttgttttcaacc |
11834486 |
T |
|
| Q |
707 |
cttatggtggaaaaatggctcagattccggccgatgcaacgccatttcctcaccgtgccggaaatttgttcaaaattcaattctcagtgaattggaatga |
806 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
11834485 |
cttatggtggaaaaatcgctgagattccggccgatgcaacgccatttcctcaccgtgctggaaatttgttcaaaattcaatattcagtgaattgggatga |
11834386 |
T |
|
| Q |
807 |
tccagcacctaatgcaacagttggttttttgaatcaagctaaggtactt |
855 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11834385 |
tccatcacctaatgcaacagttggttttttgaatcaagctaaggtactt |
11834337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 11933708 - 11933903
Alignment:
| Q |
8 |
ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt |
107 |
Q |
| |
|
|||||||||| || ||||| |||||||| || ||||||| ||| || ||||||||||| | || |||||||||||||| ||||| |||| | ||||| |
|
|
| T |
11933708 |
ttggtgttggaggacatttaagtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgt |
11933807 |
T |
|
| Q |
108 |
taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctta |
203 |
Q |
| |
|
||| ||||| | | |||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
11933808 |
taatggtagattgcttgatagaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttctta |
11933903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 11946929 - 11947124
Alignment:
| Q |
8 |
ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt |
107 |
Q |
| |
|
|||||||||| || ||||| |||||||| || ||||||| ||| || ||||||||||| | || |||||||||||||| ||||| |||| | ||||| |
|
|
| T |
11946929 |
ttggtgttggaggacatttaagtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgt |
11947028 |
T |
|
| Q |
108 |
taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctta |
203 |
Q |
| |
|
||| ||||| | | |||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
11947029 |
taatggtagattgcttgatagaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttctta |
11947124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 604 - 724
Target Start/End: Original strand, 11918121 - 11918241
Alignment:
| Q |
604 |
aagagaaaatctgattatgttcagaaagctatttcaaaagatgatttggaagggatttggaaaaagatgattgagttgggaaaagttggatttgttttca |
703 |
Q |
| |
|
|||||||||||||||||||| || || | ||||| ||||| | ||||||||| ||||||||||||||||| ||||||| ||||| || | | |||||| |
|
|
| T |
11918121 |
aagagaaaatctgattatgtaaaggaaccaatttctaaagagggtttggaaggaatttggaaaaagatgatcgagttggaaaaaggtgtaatgtttttca |
11918220 |
T |
|
| Q |
704 |
acccttatggtggaaaaatgg |
724 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
11918221 |
atccttatggtggaaaaatgg |
11918241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 11917654 - 11917732
Alignment:
| Q |
125 |
ataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctta |
203 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||| || ||||||||||| ||||| |
|
|
| T |
11917654 |
atagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttctta |
11917732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 8338659 - 8338731
Alignment:
| Q |
125 |
ataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct |
197 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
8338659 |
atagaaaatcaatgggagaagatctgttttgggctattaggggtggtggtggtgctagttttggtgttattct |
8338731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 648 - 682
Target Start/End: Original strand, 11947572 - 11947606
Alignment:
| Q |
648 |
tttggaagggatttggaaaaagatgattgagttgg |
682 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
11947572 |
tttggaagggatttggaaaaagatgattaagttgg |
11947606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 38125495 - 38125648
Alignment:
| Q |
8 |
ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt |
107 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| ||| || |||||| ||| || ||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
38125495 |
ttggtgttggtggtcacttgagtggtggagggtatggtaacatgatgagaaaatttgggttgtctattgataatgttgttgatgctgaaattgttgatgt |
38125594 |
T |
|
| Q |
108 |
taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctat |
161 |
Q |
| |
|
||| |||||| || | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38125595 |
taatggtaggattcttgataggaaatcaatgggtgaagaacttttttgggctat |
38125648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 36107919 - 36108106
Alignment:
| Q |
10 |
ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta |
109 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| || || |||||| |||| | ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
36107919 |
ggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaatggttgatgtta |
36108018 |
T |
|
| Q |
110 |
agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct |
197 |
Q |
| |
|
|||||| || | |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
36108019 |
agggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattct |
36108106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 38090661 - 38090845
Alignment:
| Q |
8 |
ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt |
107 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||| ||| || |||||| ||| |||||||||||||||||| | |||||| | ||||||||||| |
|
|
| T |
38090661 |
ttggtgttggtggacattttagtggtggggggtatggtaacatgatgagaaaatttgggttatctgttgataatattttggatgctaagattgttgatgt |
38090760 |
T |
|
| Q |
108 |
taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgtt |
192 |
Q |
| |
|
| | || || | | ||||| |||||||||| |||||| ||||||||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
38090761 |
tgatggaagagtgcttgatagggaatcaatgggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgtt |
38090845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 21482656 - 21482843
Alignment:
| Q |
15 |
tggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggt |
114 |
Q |
| |
|
|||||||||||| |||||| || ||||| | ||| || |||||| |||| | |||||||||||||||||||| || ||||||||||||| || ||| |
|
|
| T |
21482656 |
tggtggtcatttttctggtggtggatatggaaatatgatgagaaaatttggtctttctgttgataatattattgacgcaaaaattgttgatgtgaatggt |
21482755 |
T |
|
| Q |
115 |
aggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctt |
202 |
Q |
| |
|
| | | |||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||| || |||||| |
|
|
| T |
21482756 |
aatatccttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttatggtgttattttgtctt |
21482843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 36080101 - 36080236
Alignment:
| Q |
56 |
gaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggtaggcttttgaataggaaatcaatgggtgaagatcttttttg |
155 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||| || |||||||||||||||| ||||| || | |||| ||||||||||| |||||| | ||||| |
|
|
| T |
36080101 |
gaaaatttggtctatctgttgataatataattgacgcaaaaattgttgatgttaatggtagtattcttgatagaaaatcaatgggagaagatttattttg |
36080200 |
T |
|
| Q |
156 |
ggctatactaggtggtggtggtgctagtttcggtgt |
191 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
36080201 |
ggctataaggggtggtggtggtgcaagttttggtgt |
36080236 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 36100660 - 36100847
Alignment:
| Q |
10 |
ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta |
109 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| || || |||||| |||| | ||| |||||||||| |||||||| ||||||||||||| | |
|
|
| T |
36100660 |
ggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctattgataatatcattgatgcaaaaattgttgatgtca |
36100759 |
T |
|
| Q |
110 |
agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct |
197 |
Q |
| |
|
| |||| | | |||| || |||||||| |||||||| |||||||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
36100760 |
atggtaatatccttgatagaaagtcaatgggagaagatctattttgggctataaggggtggtggtggtgctagttttggtgttattct |
36100847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 38129448 - 38129601
Alignment:
| Q |
8 |
ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt |
107 |
Q |
| |
|
||||||||||||| ||||| ||||| ||||||||||||| ||| || |||||| || |||||| ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
38129448 |
ttggtgttggtggccatttgagtggaggagggtatggtaacatgatgagaaaattcgggttatctattgataatattgttgatgctaaaattattgatgt |
38129547 |
T |
|
| Q |
108 |
taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctat |
161 |
Q |
| |
|
|| ||||| || | | | |||| | ||||| |||||||||||||||||||| |
|
|
| T |
38129548 |
caatggtagaattcttgacaagaaaactatgggggaagatcttttttgggctat |
38129601 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 604 - 723
Target Start/End: Original strand, 38126088 - 38126207
Alignment:
| Q |
604 |
aagagaaaatctgattatgttcagaaagctatttcaaaagatgatttggaagggatttggaaaaagatgattgagttgggaaaagttggatttgttttca |
703 |
Q |
| |
|
||||| |||||||||||||| |||| | ||||||||||||| ||||||||||| | || ||| ||||||| ||||||||||| ||||| ||||| |
|
|
| T |
38126088 |
aagaggaaatctgattatgtggagaatccaatttcaaaagatgggttggaagggatatataagaagctgattgaattgggaaaagtaggattgactttca |
38126187 |
T |
|
| Q |
704 |
acccttatggtggaaaaatg |
723 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
38126188 |
acccttacggtggaaaaatg |
38126207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 34971680 - 34971539
Alignment:
| Q |
56 |
gaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggtaggcttttgaataggaaatcaatgggtgaagatcttttttg |
155 |
Q |
| |
|
|||||| |||| | ||| |||||||||| ||||| || ||||||||||||| || |||| || | |||| || |||||||| |||||||| ||||| |
|
|
| T |
34971680 |
gaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatctcttttg |
34971581 |
T |
|
| Q |
156 |
ggctatactaggtggtggtggtgctagtttcggtgttgttct |
197 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
34971580 |
ggctatcagaggtggtggtggtgctagttttggtgttattct |
34971539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 36090283 - 36090229
Alignment:
| Q |
143 |
aagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct |
197 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| |||||| |||| |
|
|
| T |
36090283 |
aagatcttttttgggctataagaggtggtggtggggctagttttggtgttattct |
36090229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 38081842 - 38081901
Alignment:
| Q |
10 |
ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggttta |
69 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| || ||||||| |||||||||||| |
|
|
| T |
38081842 |
ggtgttggtggacatttcagtggtggcggctatggaaccttgttgcgtaaatatggttta |
38081901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 6838680 - 6838867
Alignment:
| Q |
10 |
ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta |
109 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||| | || || |||||| |||| | ||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
6838680 |
ggtgctggtggtcatttctctggtggtgggtatggaaatttgatgagaaaatttggtctttctattgataatattattgacgcaaaaattgttgatgtta |
6838779 |
T |
|
| Q |
110 |
agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct |
197 |
Q |
| |
|
|||||| || | |||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
6838780 |
agggtaatattcttgatagaaaatcaatgggagaagatcttttttgggccataagaggtggtggtggtgctagttttggtgttattct |
6838867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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