View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_209 (Length: 246)

Name: NF6863A_low_209
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_209
NF6863A_low_209
[»] chr3 (5 HSPs)
chr3 (99-232)||(45395426-45395560)
chr3 (9-71)||(23566949-23567011)
chr3 (9-69)||(39737784-39737844)
chr3 (20-68)||(785835-785883)
chr3 (149-215)||(50470355-50470421)
[»] scaffold0064 (1 HSPs)
scaffold0064 (98-232)||(19917-20052)
[»] chr6 (3 HSPs)
chr6 (99-232)||(17922857-17922991)
chr6 (20-64)||(604984-605028)
chr6 (20-69)||(8700890-8700939)
[»] chr5 (4 HSPs)
chr5 (99-227)||(3623465-3623594)
chr5 (9-71)||(39121894-39121956)
chr5 (11-63)||(14393983-14394035)
chr5 (23-71)||(20983543-20983591)
[»] chr4 (6 HSPs)
chr4 (9-98)||(38147357-38147453)
chr4 (9-71)||(12639781-12639843)
chr4 (9-63)||(28103806-28103860)
chr4 (23-71)||(43012754-43012802)
chr4 (9-64)||(917683-917738)
chr4 (25-71)||(12629834-12629880)
[»] chr2 (6 HSPs)
chr2 (9-70)||(4329599-4329660)
chr2 (7-71)||(29770766-29770830)
chr2 (9-71)||(39865358-39865420)
chr2 (9-68)||(4330167-4330226)
chr2 (20-70)||(9074598-9074648)
chr2 (11-83)||(30674485-30674557)
[»] chr7 (4 HSPs)
chr7 (19-74)||(28750990-28751045)
chr7 (9-71)||(31167014-31167076)
chr7 (20-70)||(38916457-38916507)
chr7 (9-50)||(27596002-27596043)
[»] chr8 (3 HSPs)
chr8 (9-67)||(26759207-26759265)
chr8 (19-74)||(308301-308356)
chr8 (11-63)||(186682-186734)
[»] chr1 (1 HSPs)
chr1 (20-71)||(23269946-23269997)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 45395560 - 45395426
Alignment:
Q  99 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  45395560 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgttattaccatccttggatatttttctttccattaactaattatattctct 45395461  T
Q  199 caccccatgttttcc-ttccaccgcttgatgtcca 232  Q
    || |||||||||||| |||||||||||||||||||    
T  45395460 catcccatgttttcctttccaccgcttgatgtcca 45395426  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 23566949 - 23567011
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    ||||||||||||||||| ||  ||||||||| | |||||||| ||||||||||||||||||||    
T  23566949 tgagatgaattaagtgatattcatttatttaattactatttattgttccttatccagtgcccc 23567011  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 39737784 - 39737844
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcc 69  Q
    ||||||||||||| | ||||| ||||||||| | |||||||| ||||||||||||||||||    
T  39737784 tgagatgaattaaataagatctatttatttaattactatttattgttccttatccagtgcc 39737844  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 785835 - 785883
Alignment:
Q  20 aagtgagatcaatttatttattgactatttactgttccttatccagtgc 68  Q
    |||||||||| |||||||||||| ||||||| |||||||||| ||||||    
T  785835 aagtgagatccatttatttattgcctatttaatgttccttattcagtgc 785883  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 50470421 - 50470355
Alignment:
Q  149 ctattacaatccttggatgtttttctttccattaattaattatattctctcaccccatgttttcctt 215  Q
    ||||||| ||| |||||||||| | ||||| |||| |||||  |||||||| |||||||||||||||    
T  50470421 ctattaccatctttggatgtttatatttccgttaactaattgaattctctctccccatgttttcctt 50470355  T

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Target: scaffold0064 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 98 - 232
Target Start/End: Complemental strand, 20052 - 19917
Alignment:
Q  98 tggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctc 197  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||| |||||||||||    
T  20052 tggaaaatgctttattacacgacataaaccatgcacgagaaagccacgatgttattatcatccttggatgtttttctttccattaattgattatattctc 19953  T
Q  198 tcaccccatgttttcc-ttccaccgcttgatgtcca 232  Q
    ||| |||||||||||| |||||||||||||||||||    
T  19952 tcatcccatgttttcctttccaccgcttgatgtcca 19917  T

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Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 99 - 232
Target Start/End: Complemental strand, 17922991 - 17922857
Alignment:
Q  99 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||    
T  17922991 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattaccacccttggatgtttttctttccattagctaattatattctct 17922892  T
Q  199 caccccatgtttt--ccttccaccgcttgatgtcca 232  Q
    || ||||||||||  | |||||||||||||||||||    
T  17922891 ca-cccatgtttttcctttccaccgcttgatgtcca 17922857  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 605028 - 604984
Alignment:
Q  20 aagtgagatcaatttatttattgactatttactgttccttatcca 64  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||    
T  605028 aagtgagatccatttatttattgcctatttattgttccttatcca 604984  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 8700939 - 8700890
Alignment:
Q  20 aagtgagatcaatttatttattgactatttactgttccttatccagtgcc 69  Q
    |||||||||| || ||||||||| ||||||| |||||||||||| |||||    
T  8700939 aagtgagatccatctatttattgcctatttattgttccttatccggtgcc 8700890  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 3623594 - 3623465
Alignment:
Q  99 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 198  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||| | |||||||| | |||||||||||||| |||||||||| ||||||||||||||    
T  3623594 ggaaaatgctttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctct 3623495  T
Q  199 caccccatgttttcc-ttccaccgcttgat 227  Q
    |||||||| |||||| ||||| ||||||||    
T  3623494 caccccatattttcctttccatcgcttgat 3623465  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 39121894 - 39121956
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    |||||| |||||||||||||  ||||||||| | |||||||| ||||||||||||||||||||    
T  39121894 tgagataaattaagtgagattcatttatttaattactatttattgttccttatccagtgcccc 39121956  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 14394035 - 14393983
Alignment:
Q  11 agatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 63  Q
    |||| ||| |||||||||| ||||||||||||  |||||| ||||||||||||    
T  14394035 agataaatcaagtgagatccatttatttattgcttatttattgttccttatcc 14393983  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 20983591 - 20983543
Alignment:
Q  23 tgagatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    ||||||| |||||||||||| ||||||| | || |||||||||||||||    
T  20983591 tgagatccatttatttattgtctatttattttttcttatccagtgcccc 20983543  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 38147453 - 38147357
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc-------ctggttaacattgcccaaattattaaat 98  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       | ||||| ||||||||||||||||||||    
T  38147453 tgagatgaattaagtgagatccatttatttattgactatttactgttccttatccagtgcccgaaagcaccggttagcattgcccaaattattaaat 38147357  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 12639781 - 12639843
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    |||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||    
T  12639781 tgaggtgaattaagtgagatccatttatttattgcctatttattgttccttatccagtacccc 12639843  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 28103860 - 28103806
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 63  Q
    ||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  28103860 tgagatgaattaagtgagatccatttatttaatgattatttattgttccttatcc 28103806  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 43012802 - 43012754
Alignment:
Q  23 tgagatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  43012802 tgagatccatttatttattgtctatttattgttccttatccagtgcccc 43012754  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 917738 - 917683
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 64  Q
    ||||||||||||| | ||||  |||||||||||||||||||| ||||| |||||||    
T  917738 tgagatgaattaacttagattcatttatttattgactatttattgttctttatcca 917683  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 12629880 - 12629834
Alignment:
Q  25 agatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  12629880 agatctattcatttattgtctatttaatgttccttatccagtgcccc 12629834  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 4329660 - 4329599
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 70  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  4329660 tgagatgaattaagtgagatctatttatttattaactatttactgttccttatccagtgccc 4329599  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 29770830 - 29770766
Alignment:
Q  7 actgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    ||||||||||||||||||||||  ||||||||| | |||||||| ||||||||||||||||||||    
T  29770830 actgagatgaattaagtgagattcatttatttaattactatttattgttccttatccagtgcccc 29770766  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 39865358 - 39865420
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    ||||||||||||||||||||  ||||||||| | |||||||| ||||||||||||||||||||    
T  39865358 tgagatgaattaagtgagattcatttatttaattactatttattgttccttatccagtgcccc 39865420  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 4330167 - 4330226
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 68  Q
    ||||||||||||||||||||| ||||||||| ||  |||| | |||||||||||||||||    
T  4330167 tgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatccagtgc 4330226  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 9074648 - 9074598
Alignment:
Q  20 aagtgagatcaatttatttattgactatttactgttccttatccagtgccc 70  Q
    |||||||||| |||||||||||| ||||||| ||||| |||||| ||||||    
T  9074648 aagtgagatccatttatttattgtctatttattgttctttatccggtgccc 9074598  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 30674485 - 30674557
Alignment:
Q  11 agatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccctggttaacattg 83  Q
    |||| ||| |||||||||| ||||||||||||  |||| | ||||| |||||| ||||||| ||||| |||||    
T  30674485 agataaatcaagtgagatctatttatttattgcttattaattgttctttatccggtgcccccggttagcattg 30674557  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 28750990 - 28751045
Alignment:
Q  19 taagtgagatcaatttatttattgactatttactgttccttatccagtgcccctgg 74  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  28750990 taagtgagatccatttatttattgcctatttattgttccttatccagtgcccctgg 28751045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 31167014 - 31167076
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    ||||||||||||||||||||  ||||||||| | |||||||| ||||||||||||||||||||    
T  31167014 tgagatgaattaagtgagattcatttatttaattactatttattgttccttatccagtgcccc 31167076  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 38916457 - 38916507
Alignment:
Q  20 aagtgagatcaatttatttattgactatttactgttccttatccagtgccc 70  Q
    |||||||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  38916457 aagtgagatccatttatttattgtctatttattgttctttatccagtgccc 38916507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 27596043 - 27596002
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactattta 50  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  27596043 tgagatgaattaagtgagatccatttatttattggctattta 27596002  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 26759265 - 26759207
Alignment:
Q  9 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtg 67  Q
    ||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||    
T  26759265 tgagatgaattaagtgagatccatttatttaattactatttattgttccttatccagtg 26759207  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 308356 - 308301
Alignment:
Q  19 taagtgagatcaatttatttattgactatttactgttccttatccagtgcccctgg 74  Q
    ||||||||||| |||||||||||| ||||||| ||||| |||||| ||||||||||    
T  308356 taagtgagatccatttatttattgcctatttattgttcattatccggtgcccctgg 308301  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 186734 - 186682
Alignment:
Q  11 agatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 63  Q
    |||| ||| |||||||||| |||||||||||  ||||||| ||||||||||||    
T  186734 agataaatcaagtgagatccatttatttattagctatttattgttccttatcc 186682  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 23269997 - 23269946
Alignment:
Q  20 aagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 71  Q
    |||| ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  23269997 aagtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 23269946  T

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