View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_212 (Length: 245)
Name: NF6863A_low_212
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_212 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 38567078 - 38567284
Alignment:
| Q |
17 |
tgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaataaacttctt |
116 |
Q |
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| T |
38567078 |
tgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaataaacttctt |
38567177 |
T |
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| Q |
117 |
tcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacattttgtaagc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567178 |
tcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacattttgtaagc |
38567277 |
T |
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| Q |
217 |
cgccgcc |
223 |
Q |
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||||||| |
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| T |
38567278 |
cgccgcc |
38567284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 38525953 - 38526162
Alignment:
| Q |
17 |
tgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaataaacttctt |
116 |
Q |
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|||||||||||||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38525953 |
tgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggataactgaaataaacttctt |
38526052 |
T |
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| Q |
117 |
tcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacattttgtaagc |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526053 |
tcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacattttgtaagc |
38526152 |
T |
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| Q |
217 |
cgccgcctga |
226 |
Q |
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|||||||||| |
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| T |
38526153 |
cgccgcctga |
38526162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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