View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_216 (Length: 244)
Name: NF6863A_low_216
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_216 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 28404 - 28628
Alignment:
| Q |
1 |
aacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28404 |
aacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcacg |
28489 |
T |
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| Q |
101 |
ctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28490 |
ctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgt |
28589 |
T |
|
| Q |
201 |
caagcaaagtgctcttcctgctattttcttggctatttt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
28590 |
caagcaaagtgctcttcctgctattttcttggctatttt |
28628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 275514 - 275738
Alignment:
| Q |
1 |
aacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
275514 |
aacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcacg |
275599 |
T |
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| Q |
101 |
ctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgt |
200 |
Q |
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| T |
275600 |
ctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttgt |
275699 |
T |
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| Q |
201 |
caagcaaagtgctcttcctgctattttcttggctatttt |
239 |
Q |
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| T |
275700 |
caagcaaagtgctcttcctgctattttcttggctatttt |
275738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 26396118 - 26396343
Alignment:
| Q |
1 |
aacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttcacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26396118 |
aacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttcacg |
26396203 |
T |
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| Q |
101 |
ctaccagtagattttctctttcgacctctttcaatgccgctctttattc-ttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396204 |
ctaccagtagattttctctttcgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttcttg |
26396303 |
T |
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| Q |
200 |
tcaagcaaagtgctcttcctgctattttcttggctatttt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26396304 |
tcaagcaaagtgctcttcctgctattttcttggctatttt |
26396343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 26460430 - 26460346
Alignment:
| Q |
114 |
ttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
198 |
Q |
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||||||| |||||||| ||||| || ||||| ||||||||||| || |||||||| |||| || ||||||||||| |||||| |
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| T |
26460430 |
ttctcttacgacctctctcaatcccactcttgattcttttcggagctccttttgtgtttgctggtttaggatcaagtaatttctt |
26460346 |
T |
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