View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_222 (Length: 244)

Name: NF6863A_low_222
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_222
NF6863A_low_222
[»] chr7 (7 HSPs)
chr7 (12-208)||(26617737-26617933)
chr7 (16-157)||(39865471-39865612)
chr7 (16-189)||(33190302-33190474)
chr7 (81-208)||(14719370-14719501)
chr7 (25-106)||(14719287-14719367)
chr7 (57-208)||(7578536-7578687)
chr7 (12-105)||(37479525-37479617)
[»] chr4 (16 HSPs)
chr4 (24-198)||(52311220-52311394)
chr4 (16-184)||(54687659-54687826)
chr4 (33-178)||(20275938-20276082)
chr4 (16-178)||(26997226-26997388)
chr4 (16-184)||(54678539-54678709)
chr4 (48-208)||(5350929-5351089)
chr4 (20-196)||(17365683-17365858)
chr4 (16-178)||(26992029-26992194)
chr4 (16-108)||(6408036-6408127)
chr4 (16-107)||(22746635-22746726)
chr4 (46-190)||(27360211-27360354)
chr4 (16-208)||(12746523-12746715)
chr4 (16-70)||(14000179-14000231)
chr4 (83-196)||(18902113-18902225)
chr4 (19-70)||(13994875-13994924)
chr4 (82-138)||(20355099-20355155)
[»] chr1 (5 HSPs)
chr1 (12-185)||(40274356-40274530)
chr1 (15-178)||(40279148-40279311)
chr1 (16-187)||(29530120-29530292)
chr1 (23-187)||(29547775-29547940)
chr1 (57-139)||(27417427-27417509)
[»] chr5 (6 HSPs)
chr5 (16-178)||(19779954-19780116)
chr5 (16-208)||(16633255-16633446)
chr5 (24-178)||(19479453-19479607)
chr5 (15-178)||(19783201-19783363)
chr5 (81-208)||(17604690-17604821)
chr5 (44-106)||(17604824-17604886)
[»] chr3 (7 HSPs)
chr3 (17-130)||(8832533-8832646)
chr3 (16-142)||(39875817-39875941)
chr3 (16-129)||(44126710-44126823)
chr3 (86-208)||(21587185-21587306)
chr3 (16-68)||(13921708-13921758)
chr3 (16-100)||(7873835-7873918)
chr3 (92-208)||(20458819-20458933)
[»] chr8 (6 HSPs)
chr8 (15-107)||(17909890-17909983)
chr8 (16-75)||(10739137-10739196)
chr8 (16-75)||(15007178-15007236)
chr8 (16-71)||(36911928-36911983)
chr8 (27-108)||(10734068-10734149)
chr8 (31-155)||(12145639-12145764)
[»] chr2 (3 HSPs)
chr2 (44-208)||(19912279-19912443)
chr2 (131-208)||(34111054-34111131)
chr2 (82-187)||(45276371-45276475)
[»] chr6 (1 HSPs)
chr6 (16-68)||(23599934-23599986)
[»] scaffold0248 (1 HSPs)
scaffold0248 (16-70)||(16258-16312)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 26617737 - 26617933
Alignment:
Q  12 atcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagat 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||||    
T  26617737 atcaaagaagaggaagaagaagatgaaaacactttgtattattctcttcacaagtgtgtctttacaattcaatatgagccctatttataggattcaagat 26617836  T
Q  112 gaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaacccactaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26617837 gaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaatccactaa 26617933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 39865612 - 39865471
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||  ||| | ||||||| ||||||||||| ||||||||||| |    
T  39865612 aagaagaggaaggagaagatgaaagcactttgtattattctcttcaagagtgtgtctttgcaatacgatatgagccctatttatagtacacaagatgagt 39865513  T
Q  116 aagtgagtgatcaagataattaaggtccactaactattcact 157  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  39865512 aagtgagtgatcaagacaattaaggtccactaactattcact 39865471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 33190302 - 33190474
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| |||| |||||  ||||||||||| |    
T  33190302 aagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatatgagaccta-ttataatacacaagatgagt 33190400  T
Q  116 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagact 189  Q
    |||||||||||||||  || ||||||||| |||||||||||| |  |||||   ||||||||| ||||||||||    
T  33190401 aagtgagtgatcaaggcaactaaggtccagtaactattcacttaccaatggaaattataggaaggtgaaagact 33190474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 14719370 - 14719501
Alignment:
Q  81 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 176  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  14719370 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 14719469  T
Q  177 aaagtgaaagactaaggatggaaacccactaa 208  Q
    || ||| ||||||||||| ||| | |||||||    
T  14719470 aaggtggaagactaaggacggacatccactaa 14719501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 14719287 - 14719367
Alignment:
Q  25 aagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 106  Q
    |||||||||||||||||  ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  14719287 aagaagaagatgaaagct-tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 14719367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 7578687 - 7578536
Alignment:
Q  57 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcac 156  Q
    |||| |||||||||||||| | |  |||||||||||||||||||||| |||| || |  |||||| |||||||  ||||||||| ||||| || || ||     
T  7578687 cttctcaagtgtgtctttatactataatatgagtcctatttataggatacaatataagcaagtgaatgatcaaagtaattaaggaccactgaccatccat 7578588  T
Q  157 tcattaatgggggttataggaaagtgaaagactaaggatggaaacccactaa 208  Q
    ||| | |||||  |||| |||| ||| ||||||||||||||| | |||||||    
T  7578587 tcacttatgggacttatgggaaggtggaagactaaggatggacatccactaa 7578536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 37479525 - 37479617
Alignment:
Q  12 atcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggaca 105  Q
    ||||||||| | |||||||| || ||||||  ||||||||||||||||||||| ||| |||||| | | ||||||  |||||||||||||||||    
T  37479525 atcaaagaaaaagaagaagatgaagaaagct-tttgtattattctcttcacaaatgtttctttacattgcaatataggtcctatttataggaca 37479617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 52311220 - 52311394
Alignment:
Q  24 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 123  Q
    |||||||| ||||||| || ||||||||||||||||||||| |||||||||| | | |||||||| |||||||||||||||||||||||| |||||||||    
T  52311220 gaagaagatgatgaaaacattttgtattattctcttcacaaatgtgtctttacactgcaatatgaatcctatttataggacacaagatgactaagtgagt 52311319  T
Q  124 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatgga 198  Q
    ||||||   |||||||||||||||||||||||||||  ||| ||||||||||||| ||| ||||||| |||||||    
T  52311320 gatcaaagaaattaaggtccactaactattcactcaccaataggggttataggaaggtggaagactagggatgga 52311394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 54687659 - 54687826
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 115  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||||||  ||||||||||| | ||||||||| |    
T  54687659 aagaagaggaaggagaagatgaaatcactttgtattattctcttcacaagtgtatctttataatacaatatgaaccctatttatagtatacaagatgagt 54687758  T
Q  116 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 184  Q
    |||| ||||||||||| |||| |||||| |||| |||||||| | |||| |||||||||||||||||||    
T  54687759 aagtaagtgatcaagaaaattgaggtcccctaattattcacttactaat-ggggttataggaaagtgaa 54687826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 33 - 178
Target Start/End: Complemental strand, 20276082 - 20275938
Alignment:
Q  33 gatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagat 132  Q
    ||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||| ||| ||||||| ||||||||||||||||      
T  20276082 gatgaaagc-ctttgtattattctgttcacatgtgtgtctttacaatacaatatgagtcctatttatagtacataagatgagtaagtgagtgatcaaggc 20275984  T
Q  133 aattaaggtccactaactattcactcattaatgggggttataggaa 178  Q
    | ||||||||||||||||||||||| | ||||||  ||||||||||    
T  20275983 agttaaggtccactaactattcacttactaatggaagttataggaa 20275938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 26997388 - 26997226
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 115  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||  |||  |||||||||||||||||||| ||||||||||| |    
T  26997388 aagaagagaaaggagaagatgaaagcactttgtattattctcttcacaagtatgtctttgcaatataatatgagtcctatttatagtacacaagatgagt 26997289  T
Q  116 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 178  Q
    |||| |||| ||||    |||||||| |||| |||||||||| | ||||| | ||||||||||    
T  26997288 aagttagtgttcaaagctattaaggttcactgactattcacttactaatgagagttataggaa 26997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 54678539 - 54678709
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 115  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||  || |||||| |||  |||||||||||||||||||  ||||||||||| |    
T  54678539 aagaagaggaaggagaagatgaaaacactttttattattctcttcacaaacgtatctttacaatataatatgagtcctatttataatacacaagatgagt 54678638  T
Q  116 aagt--gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaa 184  Q
    ||||  | ||||||||   ||||||||||||| ||||||||||| | ||| |||||||||||||| |||||    
T  54678639 aagtaagtgtgatcaatgaaattaaggtccaccaactattcacttaataacgggggttataggaaggtgaa 54678709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 5351089 - 5350929
Alignment:
Q  48 tattattctcttcacaagtgtgtctttag-aattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccact 146  Q
    ||||||||| |||||||||||||||||   |||  ||||||||||||||||||||||||||| |||| |||||| | |||||| ||||||||||||| ||    
T  5351089 tattattctattcacaagtgtgtctttttcaataaaatatgagtcctatttataggacacaaaatgagtaagtg-gcgatcaaaataattaaggtccgct 5350991  T
Q  147 aactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaacccactaa 208  Q
    ||||||||||||  |||||| | ||||||||| ||| ||||||||||||||| | |||||||    
T  5350990 aactattcactcgctaatggagattataggaaggtggaagactaaggatggacatccactaa 5350929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 17365858 - 17365683
Alignment:
Q  20 agaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagt 119  Q
    |||||||||||| | ||||| || ||||||||||| | |||||||  || |||||| | |  |||| ||| | ||||||||||||||||||||| |||||    
T  17365858 agaggaagaagatggtgaaaacattttgtattattttgttcacaaaggtttctttacactataata-gagccttatttataggacacaagatgagtaagt 17365760  T
Q  120 gagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatg 196  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||  ||||||| |||| || |||||||||||||    
T  17365759 gagtgatcaaagaaattaaggtccactaactattcactcactaatgaaggttataagaaaatggaagactaaggatg 17365683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 26992194 - 26992029
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattatt---ctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatg 112  Q
    |||||||||||  |||||||||||| |||||||||||||   |||||||||||| | |||||  |||  |||||||| ||||||||||| ||||  ||||    
T  26992194 aagaagaggaaagagaagatgaaagtactttgtattattattctcttcacaagtatatctttgcaatataatatgagccctatttatagtacacgggatg 26992095  T
Q  113 aataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 178  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||| | ||||| |  |||||||||    
T  26992094 aataagttagtgatcaaggcaattaaggtccactaactattcacttactaatgagatttataggaa 26992029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 6408127 - 6408036
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 108  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||   | ||||||  ||||||||||||||||||||    
T  6408127 aagaagaagaagaagaagatgaaag-attttgtattattctcttcacaagtgtgcctttactttgcaatataggtcctatttataggacacaa 6408036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 22746726 - 22746635
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacaca 107  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||| | |  ||| |  |||||||||||||||||||    
T  22746726 aagacgaggaggaagaagatgaaagtactttgtattattctcttcacaagggtgtcattacattgtaatgtaggtcctatttataggacaca 22746635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 27360354 - 27360211
Alignment:
Q  46 tgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccac 145  Q
    ||||||||| | |||||||| ||||||||| | |  ||||  |||||||||||||||| |||| ||||| |||||| |||||||  ||||||||| ||||    
T  27360354 tgtattatttttttcacaagcgtgtctttacactataatacaagtcctatttataggatacaatatgaacaagtgaatgatcaaagtaattaaggaccac 27360255  T
Q  146 taactattcactcattaatgggggttataggaaagtgaaagacta 190  Q
    |||| ||  | ||||| || || |||||||||| ||| |||||||    
T  27360254 taaccatctattcatttat-ggagttataggaaggtggaagacta 27360211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 12746523 - 12746715
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaa 114  Q
    |||||||||| |||||||||||||| |  |||||||||||| |||| ||||||||| || | | |  |||||  || ||||||||||||| ||| ||||     
T  12746523 aagaagaggaggaagaagatgaaagtatattgtattattcttttcataagtgtgtcattcacattataatataggttctatttataggacgcaa-atgag 12746621  T
Q  115 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaacccactaa 208  Q
     |||||| |||||||  | ||||||| ||| ||| ||| || ||| |||| | ||||||||||| ||| |||| | |||||||| | |||||||    
T  12746622 caagtgaatgatcaaagtcattaaggaccattaagtatacattcactaatagtggttataggaaggtggaagattgaggatggacatccactaa 12746715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 14000231 - 14000179
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 70  Q
    |||||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  14000231 aagaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 14000179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 18902113 - 18902225
Alignment:
Q  83 atatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtg 182  Q
    |||||||||  ||||||||||||||| ||||  ||||||  |||||| | |||||||| ||| |||  || || ||| |||||| ||||||||||| |||    
T  18902113 atatgagtcagatttataggacacaa-atgagcaagtgaaagatcaaaacaattaaggaccattaagcatccattcactaatggaggttataggaaggtg 18902211  T
Q  183 aaagactaaggatg 196  Q
    ||||| ||||||||    
T  18902212 aaagattaaggatg 18902225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 13994924 - 13994875
Alignment:
Q  19 aagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 70  Q
    ||||||||||||| |||||||||  ||||| |||||||||||||||||||||    
T  13994924 aagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgtgt 13994875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 20355099 - 20355155
Alignment:
Q  82 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaa 138  Q
    |||||||||||||||||||||| |||| ||||| || ||| |||||||  |||||||    
T  20355099 aatatgagtcctatttataggatacaatatgaacaactgaatgatcaaagtaattaa 20355155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 40274356 - 40274530
Alignment:
Q  12 atcaaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagat 111  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||| || ||||||||||  |||||||||    
T  40274356 atcaaagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgtctttgcaatacaatattagccctatttataatacacaagat 40274455  T
Q  112 gaataagtgagtgatcaagataattaaggtccactaacta-ttcactcattaatgggggttataggaaagtgaaa 185  Q
    || ||||||||||||||||  |||||| |||||||||||| |||||| | ||||||| |||||| ||| ||||||    
T  40274456 gagtaagtgagtgatcaaggcaattaaagtccactaactatttcacttactaatgggagttataagaaggtgaaa 40274530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 40279148 - 40279311
Alignment:
Q  15 aaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaa 114  Q
    ||||||||| ||| ||||||||||| |||||| ||||||||||||||||| |||||||||  ||| ||||||||  ||||||||||| |||||||||||     
T  40279148 aaagaagagaaaggagaagatgaaaacactttatattattctcttcacaaatgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgag 40279247  T
Q  115 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 178  Q
    ||||||||||||||||  ||||||||||||||||||||||||| | ||||||| ||||||||||    
T  40279248 taagtgagtgatcaaggcaattaaggtccactaactattcacttactaatgggagttataggaa 40279311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 29530292 - 29530120
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattct-cttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatga 113  Q
    ||||||||||||||| |||||||| ||||||||||||||||  ||  |||||||| |||||| | | ||||||  |||||||||||| ||||||| ||||    
T  29530292 aagaagaggaagaaggagatgaaaacactttgtattattctatttttcaagtgtgttctttacattacaatataggtcctatttatatgacacaa-atga 29530194  T
Q  114 ataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 187  Q
      |||||| |||||||   |||||||| |||||||| || || | | | |||||| ||| ||||||||| ||||    
T  29530193 gcaagtgaatgatcaaaccaattaaggaccactaaccatgcatttactgatggggtttacaggaaagtggaaga 29530120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 29547940 - 29547775
Alignment:
Q  23 ggaagaagaagatgaaagcactttgtattattctc-ttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacacaagatgaataagtg 120  Q
    |||||||||||||||||  | |||||||||||||| ||  |||||||| |||||| | | ||||||  ||||||||||||||||| || ||||  |||||    
T  29547940 ggaagaagaagatgaaaatattttgtattattctctttttcaagtgtgttctttacattacaatataggtcctatttataggacataa-atgagcaagtg 29547842  T
Q  121 agtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaaga 187  Q
    | |||||||   |||||||| |||||||| || || | | |||||||| ||||||||| ||| ||||    
T  29547841 aatgatcaaacaaattaaggaccactaaccatgcatttactaatggggattataggaaggtggaaga 29547775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 27417427 - 27417509
Alignment:
Q  57 cttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaag 139  Q
    |||| |||||||||||||| | |  |||| |||||||||||||| || |||| |||| ||||||| |||||||  ||||||||    
T  27417427 cttctcaagtgtgtctttacattataatacgagtcctatttataagatacaatatgagtaagtgaatgatcaaattaattaag 27417509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 19779954 - 19780116
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 115  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||  |||||||||||  ||| ||||||||| ||||||||||| |||||||| || |    
T  19779954 aagaagaggaatgagaagataaaagcactttgtattattctcttcaagagtgtgtctttgtaatacaatatgagccctatttatagtacacaagacgagt 19780053  T
Q  116 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 178  Q
    ||||||||||||||| |||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19780054 aagtgagtgatcaaggtaattaaggtccactaactattcacttactaatgagagttataggaa 19780116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 16633255 - 16633446
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 115  Q
    ||||||| ||||| || ||||||| |  ||| |||||||||||||||||| ||||||||  ||| ||||||||| ||||||||||||||||||| ||| |    
T  16633255 aagaagaagaagatgatgatgaaaaccttttatattattctcttcacaagcgtgtctttgcaatacaatatgagccctatttataggacacaagttgagt 16633354  T
Q  116 aagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaacccactaa 208  Q
    |||||| |||||||  |||||||||||||||||||||||||||  |||| ||||||||||||| ||| ||||||||||||||| | |||||||    
T  16633355 aagtgaatgatcaaagtaattaaggtccactaactattcactcgctaat-ggggttataggaaggtggaagactaaggatggacatccactaa 16633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 19479453 - 19479607
Alignment:
Q  24 gaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaataagtgagt 123  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||| |||||| || ||||||||||| ||||||||||| |||| ||||    
T  19479453 gaagaagaagatgaaagaactttgtattattctctttataagtgtgtctttacaatacaatataagccctatttatagtacacaagatgagtaagcgagt 19479552  T
Q  124 gatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 178  Q
    |||||||  ||||||||||||||||||||||||| | ||||| | ||||||||||    
T  19479553 gatcaaggcaattaaggtccactaactattcacttactaatgagagttataggaa 19479607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 19783201 - 19783363
Alignment:
Q  15 aaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaa 114  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||  ||||||||||| | || |||||||||  |||||||||| |||||||||||     
T  19783201 aaagaagagaaaggagaagataaaagcactttgtattattctcttcaagagtgtgtcttt-gcatacaatatgagcactatttatagtacacaagatgag 19783299  T
Q  115 taagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaa 178  Q
    |||||||||||| ||   ||||||| ||||||||||||||||| | ||||| | ||||||||||    
T  19783300 taagtgagtgatgaaagcaattaagttccactaactattcacttactaatgagagttataggaa 19783363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 17604821 - 17604690
Alignment:
Q  81 caatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaac----tattcactcattaatgggggttatagg 176  Q
    |||||||||||||||||||| || |||| |||||||  ||||||||||| |||||||||||||||||||    |||||||||| ||||||||||||||||    
T  17604821 caatatgagtcctatttataagatacaaaatgaatagctgagtgatcaaaataattaaggtccactaactatatattcactcactaatgggggttatagg 17604722  T
Q  177 aaagtgaaagactaaggatggaaacccactaa 208  Q
    || ||| ||||||||||||||| | |||||||    
T  17604721 aaggtggaagactaaggatggacatccactaa 17604690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 17604886 - 17604824
Alignment:
Q  44 tttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacac 106  Q
    ||||||||||||||||||||||||||  |||| | | ||||||||| ||||||||||||||||    
T  17604886 tttgtattattctcttcacaagtgtgcatttacactacaatatgagccctatttataggacac 17604824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 8832533 - 8832646
Alignment:
Q  17 agaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaata 116  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||  | |||||||||  ||| ||||||||  ||||||||||| ||||||||||| ||    
T  8832533 agaagaggaaggagaggatgaaatcactttgtattattctcttcaagactgtgtctttgcaatacaatatgaaccctatttatagtacacaagatgagta 8832632  T
Q  117 agtgagtgatcaag 130  Q
    ||||||||||||||    
T  8832633 agtgagtgatcaag 8832646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 39875941 - 39875817
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaagatgaat 115  Q
    ||||| |||| |||||||||||||| | ||||||||  |||||||||||||||||||||  ||| ||||| |||   ||||||||| ||||||||||| |    
T  39875941 aagaaaaggaggaagaagatgaaagtaatttgtatt--tctcttcacaagtgtgtctttgcaatacaataggagctttatttatagtacacaagatgagt 39875844  T
Q  116 aagtgagtgatcaagataattaaggtc 142  Q
    |||||||||||||||  ||||||||||    
T  39875843 aagtgagtgatcaaggcaattaaggtc 39875817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 44126710 - 44126823
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc-tttagaattcaatatgagtcctatttataggacacaagatgaa 114  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || | | | ||||||  |||||||||||||||||||| ||||     
T  44126710 aagaagagaaagaagaagatgaaagtactttgtattattctcttcacaagtgtgtcattcacattacaatataggtcctatttataggacacaa-atgag 44126808  T
Q  115 taagtgagtgatcaa 129  Q
     |||||| |||||||    
T  44126809 caagtgaatgatcaa 44126823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 21587185 - 21587306
Alignment:
Q  86 tgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaa 185  Q
    ||||||||||||||||||||||| ||||  |||||| |||||||   | ||||||  ||||||| || |  ||| |||||||||||||||||| ||| ||    
T  21587185 tgagtcctatttataggacacaa-atgagcaagtgaatgatcaaagcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaa 21587283  T
Q  186 gactaaggatggaaacccactaa 208  Q
    || ||||| |||| |||||||||    
T  21587284 gattaagggtggacacccactaa 21587306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 13921758 - 13921708
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 68  Q
    |||||||||||||||| |||||||||  ||||| |||||||||||||||||||    
T  13921758 aagaagaggaagaagatgatgaaagc--tttgtgttattctcttcacaagtgt 13921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 7873835 - 7873918
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttata 100  Q
    ||||||| ||||| || ||||||||| ||||||||||||||||| |||| ||||| |||| | |  || ||||||| ||||||||    
T  7873835 aagaagaagaagacgatgatgaaagc-ctttgtattattctctttacaaatgtgtttttacattaaaacatgagtcttatttata 7873918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 20458819 - 20458933
Alignment:
Q  92 ctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaa 191  Q
    ||||||||||| ||||| ||||  |||||| ||||||| | | ||||||| ||||||| |  || ||| |||||||| ||||||||| ||| |||| |||    
T  20458819 ctatttataggtcacaa-atgagcaagtgaatgatcaaaacatttaaggttcactaaccaaacattcactaatgggg-ttataggaaggtggaagattaa 20458916  T
Q  192 ggatggaaacccactaa 208  Q
    ||||||| | |||||||    
T  20458917 ggatggacatccactaa 20458933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 17909983 - 17909890
Alignment:
Q  15 aaagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtg-tctttagaattcaatatgagtcctatttataggacaca 107  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||| | |   |||| ||||||||||||||||||||    
T  17909983 aaagatgaggaaggagaagatgaaagtactttgtattattctcttctcaagtgtgttctttacattgagatataagtcctatttataggacaca 17909890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 10739196 - 10739137
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 75  Q
    |||||||| | | |||||||||||||||||||||||||||||||||||||| | ||||||    
T  10739196 aagaagagaatggagaagatgaaagcactttgtattattctcttcacaagtatatcttta 10739137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 15007236 - 15007178
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtcttta 75  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  15007236 aagatgaggaaggagaagatgaaagcactttgtatta-tctcttcaccagtgtgtcttta 15007178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 36911928 - 36911983
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgtc 71  Q
    |||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||    
T  36911928 aagaagaggaagaagaaggtgaaaacactttttattattctcttcagaagtgtgtc 36911983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 10734149 - 10734068
Alignment:
Q  27 gaagaagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtcctatttataggacacaa 108  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||| |   |||| |  ||||||||||||||| ||||    
T  10734149 gaagaagatgaaaacactttgtattattctcttcacaagtatatctttacatgacaatgtaggtcctatttataggatacaa 10734068  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 155
Target Start/End: Original strand, 12145639 - 12145764
Alignment:
Q  31 aagatgaaagcactttgtattattctcttcacaagtgtgtctttagaattcaatatgagtccta-tttataggacacaagatgaataagtgagtgatcaa 129  Q
    |||||||||||  | |||||||| ||||||| |||||||| |||| | |   | ||||||| || |||||||||||||| ||||  ||||||||||||||    
T  12145639 aagatgaaagctttgtgtattatcctcttcagaagtgtgtttttacactaacaaatgagtcttattttataggacacaaaatgagcaagtgagtgatcaa 12145738  T
Q  130 gataattaaggtccactaactattca 155  Q
      ||||||||  ||||||||||||||    
T  12145739 agtaattaagaaccactaactattca 12145764  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 19912443 - 19912279
Alignment:
Q  44 tttgtattattctcttcacaagtgtgtctttagaattc-aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtc 142  Q
    ||||||||||||||||||||||||| | |||   |||  |||||  |||||||||||||||||||| ||||  ||||||||||||||   |||||||| |    
T  19912443 tttgtattattctcttcacaagtgtatattttacattataatataggtcctatttataggacacaa-atgagcaagtgagtgatcaaagcaattaaggac 19912345  T
Q  143 cactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaacccactaa 208  Q
     |||||| || || ||| |||| ||||||||||||| ||| |||| ||||| |||| | |||||||    
T  19912344 tactaaccatacattcaataataggggttataggaaggtggaagattaagggtggacatccactaa 19912279  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 34111054 - 34111131
Alignment:
Q  131 ataattaaggtccactaactattcactcattaatgggggttataggaaagtgaaagactaaggatggaaacccactaa 208  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||||| ||| | || |||||||||| | |||||||    
T  34111054 ataattaaggtccactaactattcactcactaatgcgagttataggaaggtggatgattaaggatggacatccactaa 34111131  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 45276475 - 45276371
Alignment:
Q  82 aatatgagtcctatttataggacacaagatgaataagtgagtgatcaagataattaaggtccactaactattcactcattaatgggggttataggaaagt 181  Q
    ||||||||||||||||||||||||||| |||| ||||||| || |||| |  ||||||| |||||||| || || ||| |||   |||||||||||| ||    
T  45276475 aatatgagtcctatttataggacacaa-atgagtaagtgaatggtcaaaactattaaggaccactaaccatacattcactaacatgggttataggaaggt 45276377  T
Q  182 gaaaga 187  Q
    | ||||    
T  45276376 ggaaga 45276371  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 23599934 - 23599986
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgt 68  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  23599934 aagaagatgaagaagaagatgaaagcattttgtattattctcttcataagtgt 23599986  T

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Target: scaffold0248 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 16312 - 16258
Alignment:
Q  16 aagaagaggaagaagaagatgaaagcactttgtattattctcttcacaagtgtgt 70  Q
    |||||||||||||| || || |||||||||||||||||| |||||||| ||||||    
T  16312 aagaagaggaagaaaaatataaaagcactttgtattattttcttcacaggtgtgt 16258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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