View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_223 (Length: 243)
Name: NF6863A_low_223
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_223 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 34042787 - 34043008
Alignment:
| Q |
22 |
gttccgttgtgttagattcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgt |
121 |
Q |
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| T |
34042787 |
gttccgttgtgttagattcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgt |
34042886 |
T |
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| Q |
122 |
tgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcg |
221 |
Q |
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| T |
34042887 |
tgttgtgctgattttttgttacattcagctctcgaggagtgatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcg |
34042986 |
T |
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| Q |
222 |
cagcacaaattgaatctggagg |
243 |
Q |
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| T |
34042987 |
cagcacaaattgaatctggagg |
34043008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 82 - 243
Target Start/End: Complemental strand, 4046366 - 4046205
Alignment:
| Q |
82 |
ttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttat |
181 |
Q |
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|||| ||||||| |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
4046366 |
ttatcaatttgtagttgatttagtttctgaatcatatggttgctgtgctgattttttgttacattcagttctcgaggagtgatgatcctgattcatttat |
4046267 |
T |
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| Q |
182 |
tccgtaccttgcgatgaactatttcgatcgcttcttatcgcagcacaaattgaatctggagg |
243 |
Q |
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| T |
4046266 |
tccgtaccttgtgatgaactatttcaatcttttcaaatcgcagcacaaattgaatctggagg |
4046205 |
T |
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