View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_224 (Length: 243)

Name: NF6863A_low_224
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_224
NF6863A_low_224
[»] chr1 (16 HSPs)
chr1 (4-237)||(13244695-13244928)
chr1 (7-134)||(13271474-13271601)
chr1 (7-218)||(13085911-13086122)
chr1 (7-135)||(12964052-12964180)
chr1 (7-143)||(30368285-30368421)
chr1 (7-211)||(13100812-13101015)
chr1 (4-218)||(13081039-13081253)
chr1 (7-143)||(13070353-13070489)
chr1 (7-143)||(13094278-13094414)
chr1 (7-213)||(13007009-13007215)
chr1 (7-213)||(13204268-13204474)
chr1 (10-135)||(19279348-19279473)
chr1 (7-143)||(13129707-13129843)
chr1 (7-143)||(13161400-13161536)
chr1 (4-217)||(13065387-13065600)
chr1 (75-134)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (12-103)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 13244695 - 13244928
Alignment:
Q  4 ccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  13244695 ccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttat 13244794  T
Q  104 ggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||    
T  13244795 ggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaag 13244894  T
Q  204 atgcatttgatataacaaagttgcaagtgtgatg 237  Q
    ||||||||||||||||||||||| ||||||||||    
T  13244895 atgcatttgatataacaaagttgtaagtgtgatg 13244928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 13271601 - 13271474
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||    
T  13271601 tcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatgga 13271502  T
Q  107 agtttcgcatacaggtggtggaaggtca 134  Q
    |||||| |||||| ||||||||||||||    
T  13271501 agtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 13086122 - 13085911
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    |||| |||||||||||| || |||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  13086122 tcttgcaagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatgga 13086023  T
Q  107 agtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatg 206  Q
    |||||| |||||| || |||||||||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | |||||||||||    
T  13086022 agtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatg 13085923  T
Q  207 catttgatataa 218  Q
     |||||||||||    
T  13085922 aatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 12964052 - 12964180
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| ||||    
T  12964052 tcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtgga 12964151  T
Q  107 agtttcgcatacaggtggtggaaggtcac 135  Q
    |||||| |||| | |||||||||||||||    
T  12964152 agtttcacatagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 30368285 - 30368421
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    |||||||||||||||||||||||| |||| |||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | ||||||||||    
T  30368285 tcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatgga 30368384  T
Q  107 agtttcgcatacaggtggtggaaggtcaccctgtaac 143  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  30368385 agtttcacatacaggtcgtggaaggtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 13101015 - 13100812
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    |||||||||||||||||||||||| |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  ||    
T  13101015 tcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccga 13100917  T
Q  107 agtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatg 206  Q
    |||||| ||||||||||||||||||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| |||||||||    
T  13100916 agtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatg 13100817  T
Q  207 cattt 211  Q
    |||||    
T  13100816 cattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 13081039 - 13081253
Alignment:
Q  4 ccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 103  Q
    |||||||| ||||||||||| || ||||||||||| ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||    
T  13081039 ccgtcttataagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttat 13081138  T
Q  104 ggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaag 203  Q
      ||||||| ||| |||||||||||||||||| |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  |||||||    
T  13081139 ttaagtttcacattcaggtggtggaaggtcactcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaag 13081238  T
Q  204 atgcatttgatataa 218  Q
    |||||||||||||||    
T  13081239 atgcatttgatataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 13070353 - 13070489
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    |||||||||||||||||||||||| ||||||| ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||    
T  13070353 tcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacaga 13070452  T
Q  107 agtttcgcatacaggtggtggaaggtcaccctgtaac 143  Q
    |||||| ||||||||||||||||||||||||||||||    
T  13070453 agtttcacatacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 13094414 - 13094278
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    |||||||||||||||||||||||  |||| || |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| |||    
T  13094414 tcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacgga 13094315  T
Q  107 agtttcgcatacaggtggtggaaggtcaccctgtaac 143  Q
    |||||| ||||||||||||||||||||||||||||||    
T  13094314 agtttcacatacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 13007215 - 13007009
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   |    
T  13007215 tcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaa 13007116  T
Q  107 agtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatg 206  Q
    |||||| |||| ||||||||| |||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| |||||||||    
T  13007115 agtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatg 13007016  T
Q  207 catttga 213  Q
    |||||||    
T  13007015 catttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 13204474 - 13204268
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    |||||||||||||||||||||||| ||||||||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||    
T  13204474 tcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacaga 13204375  T
Q  107 agtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatg 206  Q
    | |||| |||| || | |||||||||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| |||||||||    
T  13204374 attttcacataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatg 13204275  T
Q  207 catttga 213  Q
    |||||||    
T  13204274 catttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 19279348 - 19279473
Alignment:
Q  10 tacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagt 109  Q
    |||||||||||||| || ||||||||||| ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | ||||||||||    
T  19279348 tacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagt 19279447  T
Q  110 ttcgcatacaggtggtggaaggtcac 135  Q
    ||||||||||||| ||||||||||||    
T  19279448 ttcgcatacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 13129843 - 13129707
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    |||||||||||| ||||||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||    
T  13129843 tcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacaga 13129744  T
Q  107 agtttcgcatacaggtggtggaaggtcaccctgtaac 143  Q
    |||||| ||||||||||||||||||||||||||||||    
T  13129743 agtttcacatacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 13161536 - 13161400
Alignment:
Q  7 tcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatgga 106  Q
    ||||||||||||||| |||||||  |||| || |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| |||    
T  13161536 tcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacgga 13161437  T
Q  107 agtttcgcatacaggtggtggaaggtcaccctgtaac 143  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  13161436 agtttcacatacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 13065387 - 13065600
Alignment:
Q  4 ccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 103  Q
    |||||||||||||||||||||||||||||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  |||    
T  13065387 ccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactat 13065486  T
Q  104 ggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaag 203  Q
    |||||||| |||||||  | ||||| ||||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| ||||||    
T  13065487 ggaagttttgcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaag 13065586  T
Q  204 atgcatttgatata 217  Q
    ||||||||||||||    
T  13065587 atgcatttgatata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  75 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 134  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 31380253 - 31380344
Alignment:
Q  12 caagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 103  Q
    |||||||||| |||||||| |||| ||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380253 caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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