View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_228 (Length: 242)

Name: NF6863A_low_228
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_228
NF6863A_low_228
[»] chr7 (3 HSPs)
chr7 (12-222)||(3930003-3930213)
chr7 (12-223)||(3928651-3928862)
chr7 (12-201)||(21317471-21317660)
[»] chr2 (3 HSPs)
chr2 (12-201)||(13576245-13576434)
chr2 (12-192)||(34578956-34579136)
chr2 (12-192)||(34584705-34584885)
[»] chr8 (6 HSPs)
chr8 (12-198)||(43479716-43479902)
chr8 (12-198)||(25865600-25865786)
chr8 (56-198)||(38799395-38799537)
chr8 (56-198)||(38821980-38822122)
chr8 (12-222)||(26592044-26592254)
chr8 (12-156)||(41943886-41944030)
[»] scaffold0197 (1 HSPs)
scaffold0197 (12-201)||(30909-31097)
[»] chr5 (5 HSPs)
chr5 (12-198)||(12531392-12531578)
chr5 (12-198)||(12547041-12547227)
chr5 (12-122)||(9866699-9866809)
chr5 (12-132)||(9894610-9894729)
chr5 (12-75)||(9870004-9870067)
[»] chr4 (5 HSPs)
chr4 (12-204)||(24860440-24860632)
chr4 (98-138)||(44771097-44771137)
chr4 (12-223)||(34748630-34748841)
chr4 (113-192)||(40035830-40035909)
chr4 (19-85)||(53290749-53290815)
[»] chr1 (2 HSPs)
chr1 (41-150)||(17769233-17769342)
chr1 (41-150)||(1539185-1539294)
[»] chr3 (1 HSPs)
chr3 (41-149)||(27440846-27440954)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 3930003 - 3930213
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  3930003 gaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaagagcagaaacagcactactctgaaatcgaagatcagt 3930102  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || || | ||||    
T  3930103 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagttcagtgctcttctgatacttgcggatctcacgaagtgcg 3930202  T
Q  212 actgttcctgg 222  Q
    |||||||||||    
T  3930203 actgttcctgg 3930213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 3928651 - 3928862
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    ||||||||||||||||| |||| |||||||||||||||| | ||||||||||   ||||||||| ||||||||||| ||  |||| |||| |||||||||    
T  3928651 gaatagcacaaagattcatatcttcaaacaaaccaacaatacacgcttcagcgatttcttgaagagcagaaacagcgctgatctggaatcggagatcagt 3928750  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcg 211  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||| | |||||| |||||||||    
T  3928751 tttgaaatcctgagcgatttcatgaaccaatcttttgaaaggaagtttcctaatgagaagctcagtgatcttttgatacttcctgatttcacgcaatgcg 3928850  T
Q  212 actgttcctggt 223  Q
    ||||||||||||    
T  3928851 actgttcctggt 3928862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 21317660 - 21317471
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    ||||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||    
T  21317660 gaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttcttgaagagcagaaacagcactgctctggaatctgagatcggt 21317561  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttc 201  Q
    ||||||||||||||||||||||||||| |  | ||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||    
T  21317560 tttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcagaagctcagtgctcttctggtacttgcggatttc 21317471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 13576434 - 13576245
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||| | |||||| ||    
T  13576434 gaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgaaaacggagatccgt 13576335  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttc 201  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||    
T  13576334 tttgaaatcctgagcaatttctcgaaccaatctttggaatggaagcttccttatgagaagctcggtgctcttctgatacttgcggatttc 13576245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 34578956 - 34579136
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    |||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||| ||||||||   ||| |||   ||||| ||||| | ||| ||    
T  34578956 gaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatctcaaatctgt 34579055  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 192  Q
     ||||||| |||||| ||||||||||| |  |  |||||||||||||| | ||| | ||| || || | ||||||||||||    
T  34579056 cttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatactt 34579136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 34584705 - 34584885
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    |||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||| ||||||||   ||| |||   ||||| ||||| | ||| ||    
T  34584705 gaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatctcaaatctgt 34584804  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 192  Q
     ||||||| |||||| ||||||||||| |  |  |||||||||||||| | ||| | ||| || || | ||||||||||||    
T  34584805 cttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatactt 34584885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 43479716 - 43479902
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    ||||||| ||||| || ||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||||||||    
T  43479716 gaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactctggaacctgagatcagt 43479815  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 198  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||    
T  43479816 tttgaaatcctgagcgatttccctaaccaatctttggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcggat 43479902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 25865786 - 25865600
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    |||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| |||||||||  |||||||  |||||||||||| ||||| ||    
T  25865786 gaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcagcttcctgaagtgcaagaacagcatgactctgaaatctcagatccgt 25865687  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 198  Q
    ||||||||||||||| ||||||||||| |  |  ||||||||||| || |  || | ||||||||| |||||||||||||| |||||    
T  25865686 tttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagctcagtactcttctgatacttacggat 25865600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 38799537 - 38799395
Alignment:
Q  56 gcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaa 155  Q
    |||||||||||||||||||| || ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| |  | |||||||||||    
T  38799537 gcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaa 38799438  T
Q  156 gtttcctaatgagaagctcagtgctcttctgatactttcggat 198  Q
    |||| |  ||||||||||||||||||||||||||||| |||||    
T  38799437 gtttacggatgagaagctcagtgctcttctgatacttacggat 38799395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 38821980 - 38822122
Alignment:
Q  56 gcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaa 155  Q
    |||||||||||||||||||| || ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| |  | |||||||||||    
T  38821980 gcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaa 38822079  T
Q  156 gtttcctaatgagaagctcagtgctcttctgatactttcggat 198  Q
    |||| |  ||||||||||||||||||||||||||||| |||||    
T  38822080 gtttacggatgagaagctcagtgctcttctgatacttacggat 38822122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 26592254 - 26592044
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    ||||||| || || || |||||||||||||| ||||||||||| || || || |||||||| || || || ||||||   |||||||| | |||||| ||    
T  26592254 gaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgt 26592155  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcg 211  Q
     |||||||||||||| || |||||||| |  |  ||||| |||||||| | ||||||||| || ||||||||||| ||||| ||||| || || | ||||    
T  26592154 cttgaaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacggagtgcg 26592055  T
Q  212 actgttcctgg 222  Q
    || ||||||||    
T  26592054 acggttcctgg 26592044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 41944030 - 41943886
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    |||| ||||| | ||| |||||||||||||| ||||| ||||| ||||| || ||||| |||||||||  |||||||   ||||| ||||||||||| ||    
T  41944030 gaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcctgaagtgcaagaacagcatggctctggaatctgagatccgt 41943931  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaag 156  Q
     |||||||| ||||| ||||||||||| |  | ||||||||||||    
T  41943930 cttgaaatcttgagcaatttcacgaacaagacgttggaatggaag 41943886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 31097 - 30909
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    ||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||  ||    
T  31097 gaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctctggaatctgagataggt 30998  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttc 201  Q
    ||||||||||||||||||||||||||| |  | ||||||| ||||||| || || |||||||||||||||||||| ||||| ||||||||    
T  30997 tttgaaatcctgagcgatttcacgaacaagacgttggaat-gaagttttcttatcagaagctcagtgctcttctggtacttgcggatttc 30909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 12531578 - 12531392
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    |||| ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || |||| |||||| ||    
T  12531578 gaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgt 12531479  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 198  Q
    ||||||||| ||||||||||||||||| |  || ||||||||||| ||||| || |||||||| ||||||||||| ||||| |||||    
T  12531478 tttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggat 12531392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 12547041 - 12547227
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    |||| ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || |||| |||||| ||    
T  12547041 gaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgt 12547140  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat 198  Q
    ||||||||| ||||||||||||||||| |  || ||||||||||| ||||| || |||||||| ||||||||||| ||||| |||||    
T  12547141 tttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggat 12547227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 9866699 - 9866809
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    ||||||||||||| || ||||| ||||||||||||||||||||  ||| ||||||||||||||| ||||||||| |||||||||  || || ||||||||    
T  9866699 gaatagcacaaaggttagtatcttcaaacaaaccaacaagatagtctttagcagcttcttgaagagcagaaacatcactactctagaacctcagatcagt 9866798  T
Q  112 tttgaaatcct 122  Q
     ||||||||||    
T  9866799 cttgaaatcct 9866809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 9894729 - 9894610
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    ||||||| |||| ||| ||||| |||||||||| ||||| | | |||||| || |||||||||  |||||||||||||||||||| || || ||| ||||    
T  9894729 gaatagcgcaaatattagtatcttcaaacaaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagcactactctggaacctcagaccagt 9894630  T
Q  112 tttgaaatcctgagcgatttc 132  Q
     ||| |||||||||| |||||    
T  9894629 cttg-aatcctgagcaatttc 9894610  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 9870067 - 9870004
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaag 75  Q
    ||||||| ||||||||  |||| | |||||||||||||| ||| |||||| |||||||||||||    
T  9870067 gaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaag 9870004  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 24860632 - 24860440
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    ||||||| |||||||| ||||| ||||| |  ||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| || | |||||| ||    
T  24860632 gaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactctggaaacggagatcggt 24860533  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcg 204  Q
    ||||||||| ||||||||||||||||| |  | ||||||||||||||| |  ||||||||||| ||||| || || ||||| |||||||||||    
T  24860532 tttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgcg 24860440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 44771097 - 44771137
Alignment:
Q  98 aatctgagatcagttttgaaatcctgagcgatttcacgaac 138  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  44771097 aatctgagatcggttttgaaatcctgagcgatttcacgaac 44771137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 34748841 - 34748630
Alignment:
Q  12 gaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagt 111  Q
    |||| ||||| || || ||||||||||| | |||||| ||||| || ||||| |||||||| || || || || ||    ||||| || | |||||||||    
T  34748841 gaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgcttcttgcagcgccgacacggcggagctctggaaacggagatcagt 34748742  T
Q  112 tttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcg 211  Q
     ||||||||||||||||| ||||||||||  |  ||||| || ||||| |  ||||| || || ||||||||||| ||||| ||||| || || |  |||    
T  34748741 cttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatgaggagttcggtgctcttctggtacttacggatctcacgtagagcg 34748642  T
Q  212 actgttcctggt 223  Q
    || |||||||||    
T  34748641 acggttcctggt 34748630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 40035909 - 40035830
Alignment:
Q  113 ttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 192  Q
    ||||| |||||||| |||||||||||||| || |||||||| || ||||| || |  |||||||| ||||||||||||||    
T  40035909 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 40035830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 53290815 - 53290749
Alignment:
Q  19 acaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaaca 85  Q
    |||||| || ||||| |||||||||||||||||||| |||||| |  ||| |||||| |||||||||    
T  53290815 acaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaaca 53290749  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 17769233 - 17769342
Alignment:
Q  41 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 140  Q
    |||||||||||||| ||| ||   ||||||||||| |||||||||| |||||||| ||||| |||||| |||||||||||||  | |||||| | ||| |    
T  17769233 aaaccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaa 17769332  T
Q  141 atctttggaa 150  Q
    ||||||||||    
T  17769333 atctttggaa 17769342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 1539185 - 1539294
Alignment:
Q  41 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 140  Q
    |||||||||||||| ||| ||   ||||||||||| | |||||||| |||||||| ||||| |||||| |||||||||| ||  | |||||| | ||| |    
T  1539185 aaaccaacaagataagctacactggcttcttgaagagaagaaacagtactactctaaaatcggagatctgttttgaaatacttcgtgatttctctaacaa 1539284  T
Q  141 atctttggaa 150  Q
    ||||||||||    
T  1539285 atctttggaa 1539294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 27440954 - 27440846
Alignment:
Q  41 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 140  Q
    |||||||||||||| ||| ||   ||||||||||| |||||||||   ||||||| ||||| |||||| |||||||||||||  | |||||| | ||| |    
T  27440954 aaaccaacaagataagctacactggcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaa 27440855  T
Q  141 atctttgga 149  Q
    |||||||||    
T  27440854 atctttgga 27440846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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