View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_229 (Length: 242)

Name: NF6863A_low_229
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_229
NF6863A_low_229
[»] scaffold0634 (1 HSPs)
scaffold0634 (28-227)||(2924-3123)
[»] scaffold0026 (1 HSPs)
scaffold0026 (66-227)||(12534-12695)
[»] scaffold0456 (2 HSPs)
scaffold0456 (66-227)||(247-407)
scaffold0456 (66-227)||(7392-7552)
[»] chr2 (16 HSPs)
chr2 (28-219)||(26583046-26583237)
chr2 (67-227)||(23168954-23169114)
chr2 (67-227)||(23580211-23580371)
chr2 (35-179)||(23062983-23063127)
chr2 (45-196)||(26884489-26884639)
chr2 (34-179)||(24660876-24661021)
chr2 (36-97)||(5706698-5706759)
chr2 (28-130)||(25181506-25181606)
chr2 (28-106)||(29281368-29281446)
chr2 (34-106)||(21907750-21907822)
chr2 (36-179)||(23089636-23089779)
chr2 (36-102)||(23878325-23878391)
chr2 (34-106)||(27208322-27208394)
chr2 (34-106)||(27210657-27210729)
chr2 (66-171)||(23264419-23264524)
chr2 (28-97)||(9957-10026)
[»] chr6 (16 HSPs)
chr6 (28-219)||(29614814-29615002)
chr6 (31-144)||(12167637-12167749)
chr6 (31-144)||(19286546-19286658)
chr6 (31-144)||(19877730-19877842)
chr6 (35-179)||(25396483-25396627)
chr6 (31-144)||(19786538-19786650)
chr6 (31-144)||(19883506-19883618)
chr6 (45-196)||(19300359-19300509)
chr6 (36-174)||(18799754-18799892)
chr6 (34-171)||(19471946-19472082)
chr6 (36-97)||(34640663-34640724)
chr6 (36-97)||(34647337-34647398)
chr6 (36-179)||(21565793-21565936)
chr6 (31-106)||(25470373-25470448)
chr6 (28-97)||(20008553-20008622)
chr6 (66-129)||(9186841-9186903)
[»] chr3 (7 HSPs)
chr3 (31-219)||(41455769-41455957)
chr3 (66-197)||(13302844-13302974)
chr3 (34-197)||(13324400-13324562)
chr3 (66-197)||(13313520-13313650)
chr3 (36-96)||(24192274-24192334)
chr3 (36-106)||(55499728-55499798)
chr3 (36-106)||(16802069-16802139)
[»] chr7 (12 HSPs)
chr7 (28-201)||(13742927-13743097)
chr7 (28-205)||(13123582-13123758)
chr7 (28-145)||(12710511-12710627)
chr7 (31-144)||(13006706-13006818)
chr7 (35-179)||(46625259-46625403)
chr7 (36-179)||(16676623-16676766)
chr7 (36-179)||(17650859-17651002)
chr7 (35-171)||(13678770-13678906)
chr7 (36-95)||(12591318-12591377)
chr7 (34-106)||(14320243-14320315)
chr7 (36-129)||(11383462-11383554)
chr7 (28-106)||(16090457-16090535)
[»] scaffold0154 (1 HSPs)
scaffold0154 (34-184)||(30194-30344)
[»] scaffold1773 (1 HSPs)
scaffold1773 (28-205)||(392-568)
[»] scaffold0029 (1 HSPs)
scaffold0029 (66-205)||(111146-111284)
[»] chr8 (5 HSPs)
chr8 (28-205)||(23865825-23866002)
chr8 (35-179)||(21931018-21931162)
chr8 (35-171)||(18613529-18613664)
chr8 (28-130)||(24321276-24321376)
chr8 (28-80)||(14057219-14057271)
[»] chr4 (12 HSPs)
chr4 (28-205)||(8046499-8046676)
chr4 (45-185)||(11847397-11847537)
chr4 (134-197)||(14485975-14486037)
chr4 (67-179)||(8834185-8834297)
chr4 (35-96)||(14486052-14486113)
chr4 (36-97)||(53483022-53483083)
chr4 (35-127)||(15244566-15244658)
chr4 (67-130)||(27905613-27905675)
chr4 (35-179)||(15307415-15307563)
chr4 (28-106)||(16147436-16147514)
chr4 (35-177)||(13887086-13887228)
chr4 (35-177)||(13887943-13888085)
[»] scaffold0138 (1 HSPs)
scaffold0138 (35-179)||(1117-1261)
[»] scaffold0117 (1 HSPs)
scaffold0117 (28-205)||(9243-9419)
[»] scaffold0053 (2 HSPs)
scaffold0053 (35-179)||(81826-81970)
scaffold0053 (28-106)||(80096-80174)
[»] chr5 (8 HSPs)
chr5 (31-203)||(23527845-23528016)
chr5 (34-166)||(18408553-18408685)
chr5 (31-130)||(34829432-34829530)
chr5 (28-130)||(22460506-22460606)
chr5 (28-84)||(19236294-19236350)
chr5 (31-122)||(20781102-20781192)
chr5 (149-181)||(20819456-20819488)
chr5 (149-181)||(20826556-20826588)
[»] chr1 (9 HSPs)
chr1 (31-144)||(41111214-41111326)
chr1 (34-129)||(18712098-18712193)
chr1 (45-196)||(19961472-19961622)
chr1 (35-179)||(22030360-22030504)
chr1 (28-130)||(20851738-20851838)
chr1 (28-130)||(21705625-21705725)
chr1 (28-130)||(21710167-21710268)
chr1 (28-97)||(20858365-20858434)
chr1 (66-179)||(11157441-11157554)
[»] scaffold0004 (2 HSPs)
scaffold0004 (34-179)||(129247-129393)
scaffold0004 (35-171)||(116173-116309)
[»] scaffold0001 (2 HSPs)
scaffold0001 (45-196)||(493650-493800)
scaffold0001 (35-179)||(525062-525205)
[»] scaffold0261 (1 HSPs)
scaffold0261 (31-196)||(24178-24342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (35-179)||(121200-121344)
scaffold0031 (35-179)||(132077-132221)
[»] scaffold0461 (2 HSPs)
scaffold0461 (34-129)||(658-752)
scaffold0461 (45-129)||(7605-7688)
[»] scaffold0232 (1 HSPs)
scaffold0232 (72-179)||(19059-19166)
[»] scaffold0090 (1 HSPs)
scaffold0090 (34-153)||(17492-17611)
[»] scaffold0028 (1 HSPs)
scaffold0028 (35-170)||(65413-65548)
[»] scaffold0317 (1 HSPs)
scaffold0317 (35-171)||(663-799)
[»] scaffold0222 (1 HSPs)
scaffold0222 (34-166)||(16083-16215)
[»] scaffold0085 (1 HSPs)
scaffold0085 (28-130)||(4277-4377)
[»] scaffold0025 (1 HSPs)
scaffold0025 (36-96)||(15061-15121)
[»] scaffold1061 (1 HSPs)
scaffold1061 (66-167)||(1712-1813)
[»] scaffold0476 (1 HSPs)
scaffold0476 (36-106)||(3905-3975)
[»] scaffold0094 (1 HSPs)
scaffold0094 (66-171)||(51552-51657)
[»] scaffold0034 (1 HSPs)
scaffold0034 (31-196)||(72565-72729)
[»] scaffold0483 (1 HSPs)
scaffold0483 (45-196)||(11631-11782)
[»] scaffold0124 (1 HSPs)
scaffold0124 (34-106)||(34938-35010)
[»] scaffold0247 (1 HSPs)
scaffold0247 (36-179)||(10610-10753)
[»] scaffold0453 (1 HSPs)
scaffold0453 (67-196)||(11196-11324)
[»] scaffold0720 (1 HSPs)
scaffold0720 (45-130)||(3882-3966)
[»] scaffold0206 (1 HSPs)
scaffold0206 (45-106)||(18060-18121)
[»] scaffold0235 (1 HSPs)
scaffold0235 (34-129)||(15539-15633)
[»] scaffold0169 (1 HSPs)
scaffold0169 (135-179)||(6299-6343)
[»] scaffold0139 (1 HSPs)
scaffold0139 (39-171)||(15604-15735)
[»] scaffold0335 (1 HSPs)
scaffold0335 (135-179)||(3328-3372)
[»] scaffold0310 (1 HSPs)
scaffold0310 (36-80)||(6907-6951)
[»] scaffold0023 (1 HSPs)
scaffold0023 (66-130)||(134820-134882)


Alignment Details
Target: scaffold0634 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 28 - 227
Target Start/End: Complemental strand, 3123 - 2924
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  3123 cagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggg 3024  T
Q  128 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggggatcgaattggttgatgt 227  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||    
T  3023 gacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtaccagaatcccactagaacaagccggtgatcgaattggttgatgt 2924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 12534 - 12695
Alignment:
Q  66 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 165  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgt 12633  T
Q  166 ataacccttgtataggtatcagaatcctactagaacaagctggggatcgaattggttgatgt 227  Q
    ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  12634 atatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaattggttgatgt 12695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 407 - 247
Alignment:
Q  66 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 165  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 309  T
Q  166 ataacccttgtataggtatcagaatcctactagaacaagctggggatcgaattggttgatgt 227  Q
    |||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  308 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgt 247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 7552 - 7392
Alignment:
Q  66 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 165  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 7454  T
Q  166 ataacccttgtataggtatcagaatcctactagaacaagctggggatcgaattggttgatgt 227  Q
    |||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  7453 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgt 7392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 26583237 - 26583046
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||||||||||||||| |||||| | |||||||||||||||| || ||||||||||||  || |||| ||||| |||||||| |||||    
T  26583237 cagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggg 26583138  T
Q  128 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggggatcgaattg 219  Q
    |||||||||||||||||| ||| |||| ||||||| |||||||||| || |||||| | || ||||| |||||| ||| || ||||||||||    
T  26583137 gacttcttgagcattctataatatttcttttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaattg 26583046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 23168954 - 23169114
Alignment:
Q  67 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 165  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  166 ataacccttgtataggtatcagaatcctactagaacaagctggggatcgaattggttgatgt 227  Q
    ||||||||||||||||||| || ||||||||||||||  |||| ||||| ||||||||||||    
T  23169053 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgt 23169114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 227
Target Start/End: Original strand, 23580211 - 23580371
Alignment:
Q  67 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 165  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  166 ataacccttgtataggtatcagaatcctactagaacaagctggggatcgaattggttgatgt 227  Q
    ||||||||||||||||||| || ||||||||||||||  |||| ||||| ||||||||||||    
T  23580310 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgt 23580371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 23063127 - 23062983
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||   |||||||||||| |||||||||  ||||| |||||||  |||||| | |     
T  23063127 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcctt 23063029  T
Q  134 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    |||||||||  |||||||||| || |||||||||||||||| ||||    
T  23063028 ttgagcatttaaaaatgtttctttcaacttgtataacccttatata 23062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 26884639 - 26884489
Alignment:
Q  45 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 143  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||||||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  26884639 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctctttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 26884541  T
Q  144 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 196  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  26884540 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 26884489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 24661021 - 24660876
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 132  Q
    |||||| ||||||||||||||| || | | | ||||||||||| |||   | ||||||||||| |||||||||||||  |||||||||| |||||| | |    
T  24661021 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaatttta-cttcgtgcactaggggatcct 24660923  T
Q  133 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
     ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  24660922 tttgagcattttaaaatgtttctttcaacttgtataacctttgtata 24660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 5706698 - 5706759
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 97  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  5706698 ctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 5706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 25181506 - 25181606
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||| |||||||||||  ||||| | |||||||||||||| ||||  ||||||||||| ||| |||| | ||||||||||||| ||||    
T  25181506 cagacctactgtaagctggtcgcttaagcaaactagccgtcgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggg 25181603  T
Q  128 gac 130  Q
    |||    
T  25181604 gac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 29281446 - 29281368
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  29281446 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 29281368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 21907822 - 21907750
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 106  Q
    |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  21907822 ttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 21907750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 179
Target Start/End: Original strand, 23089636 - 23089779
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttc-t 134  Q
    |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  ||| |||  | |    
T  23089636 ctgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggagacccctt 23089734  T
Q  135 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||  || ||| |||||| |||||||||||||||| ||||    
T  23089735 tgagcattgaaacatggttccttcaacttgtataacccttatata 23089779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 23878391 - 23878325
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttt 102  Q
    |||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||    
T  23878391 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttt 23878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 27208322 - 27208394
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27208322 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27208394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 27210657 - 27210729
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27210657 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27210729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 23264524 - 23264419
Alignment:
Q  66 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 163  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| ||| || |||||||| |||||| | | ||||||||| | ||||||| | || |||||    
T  23264524 gtcgcttaagcgaagatga-ccttagtcagccactttttgaacttt-gcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaactt 23264427  T
Q  164 gtataacc 171  Q
    ||||||||    
T  23264426 gtataacc 23264419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 10026 - 9957
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 97  Q
    ||||||| |||||||| ||||||||||| |||||| | ||||||||||| || ||||  |||| ||||||    
T  10026 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcaaactgagtgttagacagcct 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 29614814 - 29615002
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| ||||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||   | |||| ||||| |||||||| |||||    
T  29614814 cagacctactgtaagtcggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcct---tctgaacttttgtttcgtgcatgaggg 29614910  T
Q  128 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggggatcgaattg 219  Q
     ||||||||||||||||| ||| |||||||||||| |||||||||| | ||||||| ||||||| || |||||| ||| || ||| ||||||    
T  29614911 aacttcttgagcattctataatatttcctttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaattg 29615002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 12167749 - 12167637
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  12167749 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 12167651  T
Q  131 ttcttgagcattct 144  Q
    ||||||||| ||||    
T  12167650 ttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 19286658 - 19286546
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  19286658 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 19286560  T
Q  131 ttcttgagcattct 144  Q
    ||||||||| ||||    
T  19286559 ttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 19877842 - 19877730
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  19877842 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 19877744  T
Q  131 ttcttgagcattct 144  Q
    ||||||||| ||||    
T  19877743 ttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 25396627 - 25396483
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | |||||||| || ||||||||||| | |||| |||||| |||| | | |     
T  25396627 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcaaccactttttgaattat-gcttagtgcactagggaatcctt 25396529  T
Q  134 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||||||||||||||| || |||||||||||||||||||||    
T  25396528 ttgagcattctaaaatgtttctttcaacttgtataacccttgtata 25396483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 19786538 - 19786650
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | ||||||  |||| ||||||||    
T  19786538 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgcatgaggggac 19786636  T
Q  131 ttcttgagcattct 144  Q
    ||||||||| ||||    
T  19786637 ttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 19883618 - 19883506
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| | ||||| ||| |||| | |||||| ||||| ||||||||    
T  19883618 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggac 19883520  T
Q  131 ttcttgagcattct 144  Q
    ||||||||| ||||    
T  19883519 ttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 19300359 - 19300509
Alignment:
Q  45 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 143  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19300359 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19300457  T
Q  144 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 196  Q
    | || |||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  19300458 ttaagtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19300509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 18799892 - 18799754
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttct 134  Q
    |||||||||||||||||||| |||||| | |||||||||||||||| | |||||||||||| |||||||||  ||||| || ||||  |||||| | | |    
T  18799892 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagccactttttgaa-ctttgcctcatgcattaggggacccttt 18799794  T
Q  135 tgagcattctaaaatgtttcctttaacttgtataaccctt 174  Q
    | ||||||| || ||||| | || ||||||||||||||||    
T  18799793 ttagcattcaaacatgttcctttcaacttgtataaccctt 18799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 171
Target Start/End: Original strand, 19471946 - 19472082
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 132  Q
    |||||| ||||||||||||||| || | | |  ||||||||||||||   | ||| ||||||| ||||||||||||| ||||||||||| |||||| | |    
T  19471946 ttctgtgagccggtcgcttaagcgagccagccatcgcttaagcgaagaaggtctt-gtcagccactttttgaatttt-gcttcgtgcactaggggatcct 19472043  T
Q  133 cttgagcattctaaaatgtttcctttaacttgtataacc 171  Q
     ||||||||| | |||||||||||| |||||||||||||    
T  19472044 tttgagcattttgaaatgtttccttcaacttgtataacc 19472082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 34640663 - 34640724
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 97  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34640663 ctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 34647337 - 34647398
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 97  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34647337 ctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 179
Target Start/End: Original strand, 21565793 - 21565936
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttct 134  Q
    |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  ||| || | | |    
T  21565793 ctgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggagacccttt 21565891  T
Q  135 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||  || ||| |||||| |||||||||||||||| ||||    
T  21565892 tgagcattgaaacatggttccttcaacttgtataacccttatata 21565936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 25470373 - 25470448
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    |||| |||||||  ||||||||||| ||||||   |||||||||||||||||| ||||||||||||| ||| ||||    
T  25470373 acctactgtaagttggtcgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 25470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 20008553 - 20008622
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 97  Q
    ||||||| |||||||| ||||||||||| |||||| | || ||||||||||| ||||  |||| ||||||    
T  20008553 cagacctactgtaagctggtcgcttaagcgaactagccgttgcttaagcgaactgagtgttagacagcct 20008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  66 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 129  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 41455769 - 41455957
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||||||||||| ||| |||| | |||||| ||||| ||||||||    
T  41455769 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactgttgcttagtgcatgaggggac 41455868  T
Q  131 ttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggggatcgaattg 219  Q
    ||| ||||| ||||  ||  |   ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  |||||||||    
T  41455869 ttcctgagcgttctttaacttcctctttaacttgtataatcctagtataggtatcagaatcctactagaacaagctggcaatcgaattg 41455957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 13302844 - 13302974
Alignment:
Q  66 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 164  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||| || ||||||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  165 tataacccttgtataggtatcagaatcctacta 197  Q
    ||||||||||||||||||| || ||||||||||    
T  13302943 tataacccttgtataggtaaca-aatcctacta 13302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 13324400 - 13324562
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 132  Q
    ||||| ||||| |||||||||| || | | |  ||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | |    
T  13324400 ttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggaccct 13324498  T
Q  133 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 197  Q
     |||||||||| || ||||||| || | ||| ||||||||||||||||||| || ||||||||||    
T  13324499 tttgagcattcaaagatgtttctttcagcttatataacccttgtataggtaaca-aatcctacta 13324562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 13313520 - 13313650
Alignment:
Q  66 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 164  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||  || ||||||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  165 tataacccttgtataggtatcagaatcctacta 197  Q
    ||||||||||||||||||| || ||||||||||    
T  13313619 tataacccttgtataggtaaca-aatcctacta 13313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 24192334 - 24192274
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 96  Q
    |||||||||||||||||||| |||||| | |||||||||||||||||  ||||||||||||    
T  24192334 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 55499728 - 55499798
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||    ||||||||||| |||||||||    
T  55499728 ctgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgatcttagtcagccactttttgaa 55499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 16802069 - 16802139
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    |||||||||||||||||||| || ||| | |||| |||||||||||   ||||||| |||| |||||||||    
T  16802069 ctgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagccactttttgaa 16802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 13743097 - 13742927
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| || ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||   | |||| ||||| |||||||| |||||    
T  13743097 cagacctactataagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcct---tctgaacttttgtttcgtgcatgaggg 13743001  T
Q  128 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaac 201  Q
    |||||||||||||||||| ||| |||| ||||||| |||||||||| || |||||| | |||||||| ||||||    
T  13743000 gacttcttgagcattctataatatttcttttaactagtataaccctggtgtaggtaaccgaatcctattagaac 13742927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 13123582 - 13123758
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||    
T  13123582 cagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggg 13123680  T
Q  128 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagc 205  Q
    |||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| ||||| |||| ||||||||||    
T  13123681 gacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagc 13123758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 12710511 - 12710627
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||    
T  12710511 cagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggg 12710609  T
Q  128 gacttcttgagcattcta 145  Q
    ||||||||||||||||||    
T  12710610 gacttcttgagcattcta 12710627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 13006818 - 13006706
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  13006818 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 13006720  T
Q  131 ttcttgagcattct 144  Q
    ||||||||| ||||    
T  13006719 ttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 46625403 - 46625259
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    ||||||||| ||||||||||| || | | | ||||||||||||||||  | ||||||||||| || |||||| ||||| ||||||||| |||| | | |     
T  46625403 tctgtaagcaggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatcctt 46625305  T
Q  134 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||| ||||||||||| || ||||||||| ||||| |||||    
T  46625304 ttgagcattttaaaatgtttctttcaacttgtatgaccctggtata 46625259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 16676766 - 16676623
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttct 134  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |    
T  16676766 ctgtaagccggtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttt 16676668  T
Q  135 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||  || ||| |||||| |||||||||||||||| ||||    
T  16676667 tgagcattgaaacatggttccttcaacttgtataacccttatata 16676623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 17651002 - 17650859
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttct 134  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |    
T  17651002 ctgtaagccggtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttt 17650904  T
Q  135 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||  || ||| |||||| |||||||||||||||| ||||    
T  17650903 tgagcattgaaacatggttccttcaacttgtataacccttatata 17650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 13678906 - 13678770
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 132  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  13678906 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 13678809  T
Q  133 cttgagcattctaaaatgtttcctttaacttgtataacc 171  Q
     |||||||||  |||||||||| || || ||||||||||    
T  13678808 tttgagcattaaaaaatgtttctttcaatttgtataacc 13678770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 12591318 - 12591377
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 95  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||    
T  12591318 ctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 14320243 - 14320315
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    |||||| ||||||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  14320243 ttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 14320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 11383462 - 11383554
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 129  Q
    |||| |||| |||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  11383462 ctgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 16090535 - 16090457
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    ||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  16090535 cagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 16090457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 30344 - 30194
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-t 132  Q
    |||||||||||||||||||||| || | | |  |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||  |    
T  30344 ttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcagccactttctgaatttt-gcttcgtgcactaggggaccct 30246  T
Q  133 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtat 184  Q
     ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  30245 tttgagcattctaaaatgtttctttcaacttgtataacccttgtataggtat 30194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 568 - 392
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||    
T  568 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggg 470  T
Q  128 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagc 205  Q
    |||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| | |||||||| ||||||||||    
T  469 gacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtaaccgaatcctattagaacaagc 392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 111284 - 111146
Alignment:
Q  66 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 165  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||| | |||||||||| ||    
T  111284 gtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataatttctcctttaactagt 111186  T
Q  166 ataacccttgtataggtatcagaatcctactagaacaagc 205  Q
    |||||||| || |||||| | |||||||| ||||||||||    
T  111185 ataaccctggtgtaggtaactgaatcctattagaacaagc 111146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 23866002 - 23865825
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||    
T  23866002 cagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttctgaactattacttagtgcatgaggg 23865903  T
Q  128 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagc 205  Q
    |||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| ||||| |||| ||||||||||    
T  23865902 gacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagc 23865825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 21931162 - 21931018
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag-tcagcctctttttgaatttttgcttcgtgcacgagggga--ct 131  Q
    |||||||| ||||||||||||||||| | |  ||||||||||||||   ||||| | |||||| ||||||||  ||||||||| | ||| |||| |  |     
T  21931162 tctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--ttttgcttcctccactagggaatcca 21931065  T
Q  132 tcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||| ||||||||||||||||||| || ||||||||||||| |||||||    
T  21931064 tct-gagcattctaaaatgtttctttcaacttgtataacctttgtata 21931018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 18613664 - 18613529
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 132  Q
    ||||||||| ||||||||||| |||| | | ||||||||||||||| ||| |||||||| ||| | |||||||  ||||| |||||||| |||||| | |    
T  18613664 tctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccac-ttttgaa-ctttgcctcgtgcactaggggatcct 18613568  T
Q  133 cttgagcattctaaaatgtttcctttaacttgtataacc 171  Q
    ||||||||||  |||||||| | || |||||||||||||    
T  18613567 cttgagcatttaaaaatgttcctttcaacttgtataacc 18613529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 24321276 - 24321376
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| ||||    
T  24321276 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggg 24321373  T
Q  128 gac 130  Q
    |||    
T  24321374 gac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 14057219 - 14057271
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 80  Q
    ||||| |||||| ||||||||||||||| || ||| | |||||||||||||||    
T  14057219 cagactttctgtgagccggtcgcttaagcgagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 8046499 - 8046676
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| || ||||  ||||||||||| || |||   |||||||||||||||||||||||||||||||| ||| |||| | || ||| ||||| |||||    
T  8046499 cagacctactataagttggtcgcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggg 8046598  T
Q  128 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagc 205  Q
    |||||||||||||||||| ||  |   |||||||| |||||||||| || |||||| | |||||||| ||||||||||    
T  8046599 gacttcttgagcattctataacttcctctttaactagtataaccctggtgtaggtaaccgaatcctattagaacaagc 8046676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 11847537 - 11847397
Alignment:
Q  45 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 143  Q
    ||||||||||| |||||| | |||||||||||||  ||||||||||||||||||||| ||||  ||||||| |||||| |||||| | | ||||| |||     
T  11847537 ggtcgcttaagcgaactacccgtcgcttaagcgagctgagccttagtcagcctctttctgaa-ctttgctttgtgcactaggggacccttttgagtattt 11847439  T
Q  144 taaaatgtttcctttaacttgtataacccttgtataggtatc 185  Q
      || |||||| | || |||||||||| ||||||||||||||    
T  11847438 gtaagtgtttcttctagcttgtataactcttgtataggtatc 11847397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 14486037 - 14485975
Alignment:
Q  134 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 197  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgtataggtatca-aatcctacta 14485975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 8834297 - 8834185
Alignment:
Q  67 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 165  Q
    ||||||||||||||   | ||||||||||| |||||||| |||||||||| ||||| || | | | | |||||| |||||||||||||| || |||||||    
T  8834297 tcgcttaagcgaagaaggtcttagtcagccactttttga-tttttgcttcatgcactagagaatccttttgagcgttctaaaatgtttctttcaacttgt 8834199  T
Q  166 ataacccttgtata 179  Q
    |||||| |||||||    
T  8834198 ataacctttgtata 8834185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 14486113 - 14486052
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 96  Q
    ||||||||||||||||||||| || | | |  ||||||||||||||||||||||||||||||    
T  14486113 tctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtcagcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 53483083 - 53483022
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 97  Q
    |||||||| ||||||||||| |||||  | |||||||||||||||||| |||||||||||||    
T  53483083 ctgtaagctggtcgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct 53483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 15244658 - 15244566
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||||||||||||||||| ||   | | ||||||||| |||||   | ||||||||||| ||||||||| ||||||||||||||| ||||    
T  15244658 tctgtaagccggtcgcttaagcgagtcaaccgtcgcttaatcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 27905675 - 27905613
Alignment:
Q  67 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    ||||||||||||  ||||||| |||||||| |||| |||||||||||||||||||  |||||||    
T  27905675 tcgcttaagcgagctgagcct-agtcagccactttctgaatttttgcttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 15307563 - 15307415
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    |||||||| |||||||||||| || | | |  ||||||||||||||   | ||||||||||| ||||| |||  |||||||||||||| |||| | | |     
T  15307563 tctgtaagtcggtcgcttaagcgagccagccatcgcttaagcgaagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactagggaatcctt 15307464  T
Q  134 ttgagcattctaaaatgtttccttt---aacttgtataacccttgtata 179  Q
    | ||||||| ||||||||||  |||   ||||||||||||| |||||||    
T  15307463 tcgagcattttaaaatgttttttttttcaacttgtataacctttgtata 15307415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 16147436 - 16147514
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    ||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  16147436 cagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 16147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 13887228 - 13887086
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | ||||||| ||||||||||||||| |||| | | |     
T  13887228 tctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttgaa-ttttgcttcgtgcactagggaatcctt 13887131  T
Q  134 ttgagcattct-aaaatgtttcctttaacttgtataacccttgta 177  Q
    |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13887130 ttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 13888085 - 13887943
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | ||||||| ||||||||||||||| |||| | | |     
T  13888085 tctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttgaa-ttttgcttcgtgcactagggaatcctt 13887988  T
Q  134 ttgagcattct-aaaatgtttcctttaacttgtataacccttgta 177  Q
    |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13887987 ttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 1261 - 1117
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    ||||| ||||||||||||||| || | | | ||||||||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | |     
T  1261 tctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcctt 1163  T
Q  134 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  1162 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 9243 - 9419
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| | || |||| ||| ||||| |||||    
T  9243 cagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggg 9341  T
Q  128 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagc 205  Q
    |||||||||||||||||  ||  |   |||||||| |||||||| | || |||||| ||||| |||| ||||||||||    
T  9342 gacttcttgagcattctgtaacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagc 9419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 179
Target Start/End: Original strand, 81826 - 81970
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | ||||||||||| ||||||||| ||||||||||| ||| |||| | | |     
T  81826 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatcctt 81924  T
Q  134 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||| ||||||||||| || |||||||||||||||||||||    
T  81925 ttgagcattttaaaatgtttctttcaacttgtataacccttgtata 81970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 80096 - 80174
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    ||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  80096 cagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 80174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 23528016 - 23527845
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  23528016 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 23527918  T
Q  131 ttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaa 203  Q
    ||||||||| ||||  ||  |   |||||||| |||||||||| || |||||| |  ||||||| ||||||||    
T  23527917 ttcttgagcgttctttaacttcctctttaactagtataaccctggtgtaggtaaccaaatcctattagaacaa 23527845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 18408553 - 18408685
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg-aagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact- 131  Q
    ||||||||||||||||||||||  ||||| | |||||||||||| || ||| |||||||||||| |||||||||  ||||| |||||||| |||||| |     
T  18408553 ttctgtaagccggtcgcttaagcaaactagccgtcgcttaagcgaaaatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactaggggattc 18408650  T
Q  132 tcttgagcattctaaaatgtttcctttaacttgta 166  Q
    | ||||||||| | ||||||| | || ||||||||    
T  18408651 ttttgagcatttttaaatgttcctttcaacttgta 18408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 34829530 - 34829432
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| ||| ||||  |||||||||||||| |||||||    
T  34829530 accttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcaacctttttctgaa-ctttgcttcgtgcactaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 22460606 - 22460506
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| ||||    
T  22460606 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggg 22460509  T
Q  128 gac 130  Q
    |||    
T  22460508 gac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 19236350 - 19236294
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 84  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||    
T  19236350 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgag 19236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 20781192 - 20781102
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 122  Q
    ||||| ||| ||| ||||||||||| || ||| | |||||||||||||| | ||  ||||||||||| ||| |||| |||||||||||||||    
T  20781192 accttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactaagtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 20819488 - 20819456
Alignment:
Q  149 tgtttcctttaacttgtataacccttgtatagg 181  Q
    ||||||||||| |||||||||||||||||||||    
T  20819488 tgtttcctttagcttgtataacccttgtatagg 20819456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 20826588 - 20826556
Alignment:
Q  149 tgtttcctttaacttgtataacccttgtatagg 181  Q
    ||||||||||| |||||||||||||||||||||    
T  20826588 tgtttcctttagcttgtataacccttgtatagg 20826556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 41111326 - 41111214
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  41111326 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 41111228  T
Q  131 ttcttgagcattct 144  Q
    ||||||||| ||||    
T  41111227 ttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 18712193 - 18712098
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 129  Q
    |||||||||| ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| | ||||||| |||||| |||||||| ||||||    
T  18712193 ttctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttttgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 19961622 - 19961472
Alignment:
Q  45 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 143  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19961622 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19961524  T
Q  144 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 196  Q
    | |  |||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  19961523 ttacgtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19961472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 179
Target Start/End: Original strand, 22030360 - 22030504
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    |||||||||| |||||||||| || | | |  ||||||||||||||   | ||||||||||| |||||| |||||||||||| ||||| |||  | | |     
T  22030360 tctgtaagccagtcgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccacttttt-aatttttgcttcttgcactaggaaatcctt 22030458  T
Q  134 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    |||||||||||| |||||||| || ||||||||||||| |||||||    
T  22030459 ttgagcattctataatgtttctttcaacttgtataacctttgtata 22030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 20851738 - 20851838
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| ||||    
T  20851738 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggg 20851835  T
Q  128 gac 130  Q
    |||    
T  20851836 gac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 21705725 - 21705625
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| ||||    
T  21705725 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggg 21705628  T
Q  128 gac 130  Q
    |||    
T  21705627 gac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 21710268 - 21710167
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| |||  ||| | ||||||||| ||| ||||    
T  21710268 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcctttttccgaa-tcttgcttcgtacactaggg 21710170  T
Q  128 gac 130  Q
    |||    
T  21710169 gac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 20858365 - 20858434
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 97  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| ||||||    
T  20858365 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 11157554 - 11157441
Alignment:
Q  66 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 163  Q
    ||||||||||||||| ||| ||||||||| || ||||||||| ||| || |||||||  |||||| | | |||||||||  |||||||||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  164 gtataacccttgtata 179  Q
    ||||||||||| ||||    
T  11157456 gtataacccttatata 11157441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 129247 - 129393
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 132  Q
    |||||| ||||||||||||||| || | | | |||||||||||||||   | ||||||||||| ||||||||| ||||||||||||||| |||||| | |    
T  129247 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcct 129345  T
Q  133 cttgagca-ttctaaaatgtttcctttaacttgtataacccttgtata 179  Q
     ||||||| || | |||||||||||| ||||||||||||| |||||||    
T  129346 tttgagcatttttgaaatgtttccttcaacttgtataacctttgtata 129393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 116309 - 116173
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 132  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| ||||||||||||  ||||||||  ||||| |||||||| |||||| | |    
T  116309 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccattttttgaa-ctttgcctcgtgcactaggggatcct 116212  T
Q  133 cttgagcattctaaaatgtttcctttaacttgtataacc 171  Q
     ||||| ||| ||||||||||| || ||| |||||||||    
T  116211 tttgagtattttaaaatgtttctttcaacctgtataacc 116173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 493650 - 493800
Alignment:
Q  45 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 143  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  493650 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 493748  T
Q  144 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 196  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  493749 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 493800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 525205 - 525062
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga--ctt 132  Q
    |||||||| |||||||||||| |||| | |  ||||||||||||||   ||||| ||||||| | ||||||  ||||| ||| ||||| |||| |  | |    
T  525205 tctgtaagacggtcgcttaagcgaaccagccttcgcttaagcgaagaaggccttggtcagccacattttga--ttttgtttcctgcactagggaatccat 525108  T
Q  133 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    || ||||||||| ||||||||| || ||||||||||||| |||||||    
T  525107 ct-gagcattctgaaatgtttctttcaacttgtataacctttgtata 525062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 24178 - 24342
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 129  Q
    ||||| ||| ||| ||||||||||| || |||||  ||||||||||||  |||||||||||||| |||||| ||||  |||||||||||||| ||||||     
T  24178 accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaa-ctttgcttcgtgcactaggggac 24276  T
Q  130 cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 196  Q
    | | |||||  || | || |||||| |||| |||||||||||||||| |||| |||| |||||||||    
T  24277 ccttttgagtgtttttaagtgtttcttttagcttgtataacccttgtgtaggcatca-aatcctact 24342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 121344 - 121200
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||| ||||||||||| |||| | | |     
T  121344 tctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgactttt-gcttcgtgcactagggaatcctt 121246  T
Q  134 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  121245 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 121200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 132221 - 132077
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||| ||||||||||| |||| | | |     
T  132221 tctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgactttt-gcttcgtgcactagggaatcctt 132123  T
Q  134 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  132122 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 132077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 658 - 752
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 129  Q
    |||||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  658 ttctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  45 ggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 129  Q
    ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 19059 - 19166
Alignment:
Q  72 taagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataac 170  Q
    ||||||||| | | ||||||||||| ||||||||||||| ||||||||||| |||||| | | ||||||||| ||||||||||| || ||||| ||||||    
T  19059 taagcgaagagggtcttagtcagccactttttgaatttt-gcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataac 19157  T
Q  171 ccttgtata 179  Q
    | |||||||    
T  19158 ctttgtata 19166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 17611 - 17492
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 132  Q
    |||||||||||||||||||||| || | | |  |||||||||||||||||||||| ||||||| |||| |||| ||||| ||||||||| ||| || | |    
T  17611 ttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttggtcagccactttctgaa-ttttgtttcgtgcactaggcgagcct 17513  T
Q  133 cttgagcattctaaaatgttt 153  Q
     ||||||||||||||| ||||    
T  17512 tttgagcattctaaaaggttt 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 170
Target Start/End: Complemental strand, 65548 - 65413
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 133  Q
    ||||||||||||||||||||| |||| | | ||| |||||||| ||    |||||||||||| ||||||||| |||||| |||||||| |||||| | |     
T  65548 tctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttagtcagccactttttgaa-ttttgcctcgtgcactaggggatcctt 65450  T
Q  134 ttgagcattctaaaatgtttcctttaacttgtataac 170  Q
    |||| |||| ||||||||||| || ||||||||||||    
T  65449 ttgaacattttaaaatgtttctttcaacttgtataac 65413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 171
Target Start/End: Complemental strand, 799 - 663
Alignment:
Q  35 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 132  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  799 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 702  T
Q  133 cttgagcattctaaaatgtttcctttaacttgtataacc 171  Q
     |||||||||  |||||||||| || || ||||||||||    
T  701 tttgagcattaaaaaatgtttctttcaatttgtataacc 663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 16215 - 16083
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ct 131  Q
    |||||||||||||||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| |||||| |     
T  16215 ttctgtaagccggtcgcttaagcgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactaggggatcc 16118  T
Q  132 tcttgagcattctaaaatgtttcctttaacttgta 166  Q
    | ||||||||| | ||||||| | || ||||||||    
T  16117 ttttgagcatttttaaatgttcctttcaacttgta 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 4277 - 4377
Alignment:
Q  28 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 127  Q
    ||||||| |||||||| ||||||||||| |||||| |  ||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| ||||    
T  4277 cagacctactgtaagctggtcgcttaagcgaactagccatcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggg 4374  T
Q  128 gac 130  Q
    |||    
T  4375 gac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 15061 - 15121
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 96  Q
    |||||||||||||||||||| |||||| | |||||||||||||||||  ||||||||||||    
T  15061 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 167
Target Start/End: Complemental strand, 1813 - 1712
Alignment:
Q  66 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 163  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||| |||||| | | ||||||||| ||||||||||| || |||||    
T  1813 gtcgcttaagcgaagatga-ccttagtcagccactttttgaatttt-gcctcgtgcactaggggatccttttgagcattttaaaatgtttctttcaactt 1716  T
Q  164 gtat 167  Q
    ||||    
T  1715 gtat 1712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 3905 - 3975
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| |||||||||    
T  3905 ctgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcagccactttttgaa 3975  T

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Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 51657 - 51552
Alignment:
Q  66 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 164  Q
    |||||||||||||||   | ||||||||||| ||||||||||||| |||| |||||| |||| | | | ||||||||| ||||||||||| || ||||||    
T  51657 gtcgcttaagcgaagaaggtcttagtcagccactttttgaatttt-gctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttg 51559  T
Q  165 tataacc 171  Q
    |||||||    
T  51558 tataacc 51552  T

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Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 196
Target Start/End: Complemental strand, 72729 - 72565
Alignment:
Q  31 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 129  Q
    ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| |||||||||||||||||||  ||||||     
T  72729 accttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttgcttcgtgcattaggggac 72631  T
Q  130 cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 196  Q
    | | || || ||  |||| |||| | |||| ||| ||||||||||||||| |||||| |||||||||    
T  72630 cctttttagtatcttaaagtgttccttttagcttatataacccttgtataagtatca-aatcctact 72565  T

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Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 11631 - 11782
Alignment:
Q  45 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-tt 142  Q
    ||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||| ||||| |||||| | | ||||| | ||    
T  11631 ggtcgcttaagcgaactacccttcgcttaagcgagctgagccttagtcagcctctatctgaa-ctttgcttcatgcactaggggacccttttgagtattt 11729  T
Q  143 ctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 196  Q
     | || | |||| |||| ||||||||||||||||||||| |||| |||||||||    
T  11730 tttaagtttttcttttagcttgtataacccttgtataggcatca-aatcctact 11782  T

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Target: scaffold0124 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 34938 - 35010
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 106  Q
    |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  34938 ttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 35010  T

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Target: scaffold0247 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 10753 - 10610
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttctt 135  Q
    |||||||||||||||||||| || ||| | ||||||||||||||||    ||||||||||| |||||||||  ||||| |||||||  ||||||   |||    
T  10753 ctgtaagccggtcgcttaagcgagctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaa-ctttgcctcgtgcattaggggatccctt 10655  T
Q  136 g-agcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    | ||||||  || ||||  | ||||||||||||||||||| ||||    
T  10654 gtagcatttaaacatgtcccttttaacttgtataacccttatata 10610  T

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Target: scaffold0453 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 11196 - 11324
Alignment:
Q  67 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 165  Q
    ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| | | | || |||||  |||| |||||    
T  11196 tcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtacttttaagtgtttattttagcttgt 11294  T
Q  166 ataacccttgtataggtatcagaatcctact 196  Q
    ||||| |||||||||| |||| |||||||||    
T  11295 ataactcttgtataggcatca-aatcctact 11324  T

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Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 3882 - 3966
Alignment:
Q  45 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    ||||||||||| || ||| |  ||||||||||||| ||||| ||||||||||| ||||||||   ||||||||||||| |||||||    
T  3882 ggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtcagcctttttttgaa-ccttgcttcgtgcactaggggac 3966  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 18121 - 18060
Alignment:
Q  45 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 106  Q
    ||||||||||| || ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaa 18060  T

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Target: scaffold0235 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 15539 - 15633
Alignment:
Q  34 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 129  Q
    |||||| |||| ||||||||||||| ||| |  |||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  15539 ttctgtgagccagtcgcttaagtgagctagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa-atttgcctcgtgcactagggga 15633  T

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Target: scaffold0169 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 6343 - 6299
Alignment:
Q  135 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    |||||||||||||||||||| || ||||||||||||| |||||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgtata 6299  T

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Target: scaffold0139 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 15604 - 15735
Alignment:
Q  39 taagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttg 136  Q
    |||| |||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| ||||| ||| ||| || |||||||| ||| || | | |||    
T  15604 taagacggtcgcttaagcgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccactttt-gaacttt-gcctcgtgcactaggagatccttttg 15700  T
Q  137 agcattctaaaatgtttcctttaacttgtataacc 171  Q
    ||||||  |||||||||| || |||||||||||||    
T  15701 agcatttaaaaatgtttctttcaacttgtataacc 15735  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 3328 - 3372
Alignment:
Q  135 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 179  Q
    |||||||||| ||||||||| || ||||||||||||| |||||||    
T  3328 tgagcattctgaaatgtttctttcaacttgtataacctttgtata 3372  T

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Target: scaffold0310 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 6951 - 6907
Alignment:
Q  36 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 80  Q
    |||||||||||||||||||| || ||| | |||||||||||||||    
T  6951 ctgtaagccggtcgcttaagcgagctagccgtcgcttaagcgaag 6907  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 134882 - 134820
Alignment:
Q  66 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 130  Q
    |||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  134882 gtcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 134820  T

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