View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_23 (Length: 414)
Name: NF6863A_low_23
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 29013376 - 29013767
Alignment:
| Q |
17 |
acatcaacaaatccacctggtttaccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaacc |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013376 |
acatcaacaaatccacttggtttaccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaacc |
29013475 |
T |
|
| Q |
117 |
ctttagcaagaaactctttgagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcagcattcaatgcaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29013476 |
ctttagcaagaaactctttgagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaag |
29013575 |
T |
|
| Q |
217 |
atcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013576 |
atcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttg |
29013675 |
T |
|
| Q |
317 |
ttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtgatgcacttactccacgagctgatattatgcatatttc |
408 |
Q |
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| T |
29013676 |
ttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
29013767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 29366064 - 29366455
Alignment:
| Q |
17 |
acatcaacaaatccacctggtttaccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaacc |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366064 |
acatcaacaaatccacttggtttaccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaacc |
29366163 |
T |
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| Q |
117 |
ctttagcaagaaactctttgagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcagcattcaatgcaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29366164 |
ctttagcaagaaactctttgagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaag |
29366263 |
T |
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| Q |
217 |
atcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366264 |
atcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttg |
29366363 |
T |
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| Q |
317 |
ttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtgatgcacttactccacgagctgatattatgcatatttc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
29366364 |
ttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtgatgctcttactcctcgagctgatattaagcatatttc |
29366455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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