View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_233 (Length: 240)
Name: NF6863A_low_233
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_233 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 8772677 - 8772466
Alignment:
| Q |
13 |
atggacatcatggtggtgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttg |
112 |
Q |
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| T |
8772677 |
atggacttcatggtggtgaatcatcaacttcctgtgttgggctcttggcacaagtcatgaatgttgctggttatggacaacaacagtcatcgcagtcttg |
8772578 |
T |
|
| Q |
113 |
tttctactctgctcaaactgattgaagctggctgttgatatatttagtttcctattgtcttataatatttggctagctaatttaagactcaatagggaaa |
212 |
Q |
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||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
8772577 |
tttctactctgctcaaactagttgaatctggctgctgatatatttagtttcctattgtcttataatttttggctagctaatttaagactcaattgggaaa |
8772478 |
T |
|
| Q |
213 |
gttctctctgtt |
224 |
Q |
| |
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|||||||||||| |
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| T |
8772477 |
gttctctctgtt |
8772466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 7558027 - 7558238
Alignment:
| Q |
13 |
atggacatcatggtggtgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttg |
112 |
Q |
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| T |
7558027 |
atggacttcatggtggtgaatcatcaacttcctgtgttgggctcttggcacaagtcatgaatgttgctggttatggacaacaacagtcatcgcagtcttg |
7558126 |
T |
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| Q |
113 |
tttctactctgctcaaactgattgaagctggctgttgatatatttagtttcctattgtcttataatatttggctagctaatttaagactcaatagggaaa |
212 |
Q |
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||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
7558127 |
tttctactctgctcaaactagttgaatctggctgctgatatatttagtttcctattgtcttataatttttggctagctaatttaagactcaattgggaaa |
7558226 |
T |
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| Q |
213 |
gttctctctgtt |
224 |
Q |
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|||||||||||| |
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| T |
7558227 |
gttctctctgtt |
7558238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 19721754 - 19721965
Alignment:
| Q |
13 |
atggacatcatggtggtgaatcatcaacttcctgtgttggcctcttagcacaagtcatgaatgttgctggttatggacaacaaccgtcatcgcagtcttg |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19721754 |
atggacttcatggtggtgaatcatcaacttcctgtgttgggctcttggcataaatcatgaatgttgctggttatggacaacaacaatcatcgcagtcttg |
19721853 |
T |
|
| Q |
113 |
tttctactctgctcaaactgattgaagctggctgttgatatatttagtttcctattgtcttataatatttggctagctaatttaagactcaatagggaaa |
212 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
19721854 |
tttctactctgctcaatttgattgaagctggctgctgatatatttattttcctattgtcttataatttttggctagctaatttaagactcaataggaaaa |
19721953 |
T |
|
| Q |
213 |
gttctctctgtt |
224 |
Q |
| |
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|||||||||||| |
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| T |
19721954 |
gttctctctgtt |
19721965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 35808065 - 35808013
Alignment:
| Q |
125 |
tcaaactgattgaagctggctgttgatatatttagtttcctattgtcttataa |
177 |
Q |
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||||||||||||||| |||| | |||||||||||||||||||||||||||||| |
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| T |
35808065 |
tcaaactgattgaagttggcagctgatatatttagtttcctattgtcttataa |
35808013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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