View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_236 (Length: 239)
Name: NF6863A_low_236
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_236 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 8402833 - 8402629
Alignment:
| Q |
16 |
cagagagcagctagtatgccaactaaaaagggtttcactttaacaacatgattcttcgttccattgaatataaaacacatgattcatcgtttcataatta |
115 |
Q |
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| T |
8402833 |
cagagagcagctagtatgccaactaaaaagggtttcactttaacaacatgattcttcgttccattgaatataaaacacatgattcatcgtttcataacta |
8402734 |
T |
|
| Q |
116 |
tgcagtaattgaacaatggtcgatctagcaataagtggtttagcaatgccagtaattgctcacaagcctgcttgcttaattgggttgagtaggagtgacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8402733 |
tgcagtaattgaacaatggtcgatctagcaataagtggtttagcaatgccagtaattgctcacaagcctgcttgcttaattgggttgagtaggagtgacc |
8402634 |
T |
|
| Q |
216 |
ctatg |
220 |
Q |
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||||| |
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| T |
8402633 |
ctatg |
8402629 |
T |
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