View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6863A_low_237 (Length: 239)
Name: NF6863A_low_237
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_237 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 27491926 - 27492130
Alignment:
| Q |
16 |
atgagcatgtgtgtgtttggttatgtatgtgacacaaaccaannnnnnnaatgaattcattttgtaaaattggttgtgcttaaagtgatgtgtgcttcat |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27491926 |
atgagcatgtgtgtgtttggt-atgtatgtgacacaaaccaatttttttaatgaattcattttgtaaaattggttgtgcttaaagtgatgtgtgcttcat |
27492024 |
T |
|
| Q |
116 |
tttctagtgataataaatgttttgagtgaattaactttttgaaattgagtaccattaaaaat-aattgaatataaagtgatttatattttaatgtgtgat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
27492025 |
tttctagtgataataaatgttttgagtgaattaactttttgaaattgagtacgattaaaaatgaatttaatatgaagtgatttatgttttaatgtgtgat |
27492124 |
T |
|
| Q |
215 |
atttat |
220 |
Q |
| |
|
|||||| |
|
|
| T |
27492125 |
atttat |
27492130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University