View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_245 (Length: 236)
Name: NF6863A_low_245
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_245 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 38093125 - 38092931
Alignment:
| Q |
18 |
aatatattcaaggaaattttgcaacaagaacaaatattcctggatcccacaatttgaatgaagatcttgtcctcatagacgtatcaaattgtccgaagga |
117 |
Q |
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| T |
38093125 |
aatatattcaaggaaattttgcaactagaacaaatattcgtggatcccacaatttgaatgaagatcttgttctcatagacgtatcgaattgtccgaagga |
38093026 |
T |
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| Q |
118 |
atcccattgtttcct-ttttccaatatttctcattcaagaaaacaacatctagggtttctttccttccgcaccctttgagtcaattctgcatgctttgtt |
216 |
Q |
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| T |
38093025 |
atcccattgtttccttttttccaatatttctcattcaagaaaacaacatatagggttt-----cttgtgcaccctttgagtcaattctgcatgctttgtt |
38092931 |
T |
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