View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_249 (Length: 235)

Name: NF6863A_low_249
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_249
NF6863A_low_249
[»] chr2 (17 HSPs)
chr2 (7-129)||(41569469-41569592)
chr2 (154-232)||(41569333-41569411)
chr2 (154-232)||(18176996-18177074)
chr2 (156-227)||(37257508-37257579)
chr2 (154-227)||(433906-433979)
chr2 (154-235)||(42223886-42223967)
chr2 (154-233)||(4952416-4952495)
chr2 (154-227)||(29051597-29051668)
chr2 (154-227)||(42678805-42678879)
chr2 (154-227)||(39213712-39213785)
chr2 (15-68)||(41588523-41588576)
chr2 (154-223)||(4758585-4758654)
chr2 (168-232)||(7552625-7552691)
chr2 (155-202)||(26277152-26277199)
chr2 (154-223)||(6999014-6999083)
chr2 (154-227)||(31389603-31389676)
chr2 (154-191)||(36802952-36802989)
[»] chr5 (16 HSPs)
chr5 (154-232)||(5042304-5042382)
chr5 (154-227)||(35098947-35099020)
chr5 (154-232)||(18842258-18842336)
chr5 (164-233)||(2688922-2688991)
chr5 (164-227)||(33620674-33620737)
chr5 (154-232)||(6930996-6931074)
chr5 (154-227)||(4430878-4430951)
chr5 (154-227)||(8267762-8267835)
chr5 (154-227)||(5821553-5821627)
chr5 (154-227)||(16437506-16437580)
chr5 (154-227)||(37700516-37700588)
chr5 (154-232)||(21064163-21064241)
chr5 (154-227)||(43441794-43441867)
chr5 (164-227)||(15267850-15267913)
chr5 (154-227)||(9581635-9581708)
chr5 (154-227)||(19839928-19840001)
[»] chr4 (31 HSPs)
chr4 (154-227)||(30079902-30079975)
chr4 (154-232)||(41486080-41486158)
chr4 (154-232)||(36111332-36111411)
chr4 (154-227)||(624254-624327)
chr4 (155-232)||(51746277-51746354)
chr4 (154-232)||(5932095-5932172)
chr4 (154-232)||(21260354-21260432)
chr4 (154-232)||(33899263-33899341)
chr4 (155-232)||(42959328-42959406)
chr4 (154-235)||(6141712-6141793)
chr4 (164-227)||(12112693-12112756)
chr4 (154-232)||(9118801-9118879)
chr4 (154-232)||(14451449-14451527)
chr4 (154-232)||(51194325-51194403)
chr4 (154-227)||(31076110-31076182)
chr4 (168-227)||(35820241-35820300)
chr4 (154-232)||(47965795-47965871)
chr4 (164-227)||(53152263-53152326)
chr4 (154-232)||(25318003-25318080)
chr4 (154-232)||(48335610-48335688)
chr4 (154-227)||(39344922-39344995)
chr4 (183-232)||(50273010-50273059)
chr4 (154-218)||(37066044-37066108)
chr4 (154-232)||(439197-439275)
chr4 (154-232)||(26206914-26206992)
chr4 (155-188)||(13263378-13263411)
chr4 (154-211)||(28657399-28657456)
chr4 (154-219)||(30169970-30170035)
chr4 (154-227)||(41082374-41082446)
chr4 (166-218)||(2256281-2256333)
chr4 (167-227)||(17475946-17476005)
[»] chr8 (23 HSPs)
chr8 (154-232)||(45529183-45529261)
chr8 (154-227)||(35564345-35564418)
chr8 (154-227)||(1633832-1633905)
chr8 (154-227)||(16966841-16966914)
chr8 (154-233)||(11017861-11017940)
chr8 (154-232)||(7955944-7956022)
chr8 (168-227)||(32843884-32843943)
chr8 (154-232)||(36110194-36110272)
chr8 (154-232)||(11657938-11658015)
chr8 (154-232)||(30135952-30136030)
chr8 (154-232)||(40739850-40739927)
chr8 (154-227)||(7478836-7478908)
chr8 (154-232)||(41521024-41521102)
chr8 (154-227)||(41159831-41159904)
chr8 (156-227)||(13971182-13971253)
chr8 (154-212)||(7592905-7592963)
chr8 (154-232)||(37783908-37783986)
chr8 (154-227)||(7586105-7586177)
chr8 (155-227)||(32847628-32847701)
chr8 (154-219)||(33589180-33589245)
chr8 (174-227)||(34591340-34591393)
chr8 (154-227)||(36531651-36531723)
chr8 (154-211)||(38234063-38234120)
[»] chr3 (29 HSPs)
chr3 (154-232)||(390865-390943)
chr3 (154-227)||(33375916-33375989)
chr3 (154-227)||(44677426-44677499)
chr3 (154-232)||(37508435-37508513)
chr3 (154-232)||(10206910-10206988)
chr3 (154-232)||(39020096-39020174)
chr3 (154-227)||(32767732-32767805)
chr3 (154-233)||(49363187-49363266)
chr3 (154-232)||(28419151-28419229)
chr3 (154-227)||(8821686-8821759)
chr3 (155-227)||(54195396-54195469)
chr3 (154-232)||(11633669-11633747)
chr3 (154-232)||(43905029-43905107)
chr3 (159-232)||(30909090-30909163)
chr3 (154-227)||(54027998-54028071)
chr3 (154-226)||(22371247-22371319)
chr3 (167-227)||(54773695-54773755)
chr3 (154-232)||(39671034-39671112)
chr3 (155-232)||(36121878-36121955)
chr3 (154-219)||(46984582-46984647)
chr3 (164-232)||(29634009-29634077)
chr3 (154-233)||(46982839-46982918)
chr3 (157-191)||(24480429-24480463)
chr3 (154-219)||(26996372-26996435)
chr3 (154-223)||(37927151-37927220)
chr3 (154-227)||(39697164-39697237)
chr3 (154-227)||(39907488-39907561)
chr3 (154-227)||(52937239-52937312)
chr3 (154-223)||(55400055-55400124)
[»] chr6 (16 HSPs)
chr6 (154-227)||(2075393-2075466)
chr6 (154-227)||(11547471-11547544)
chr6 (154-232)||(3610898-3610976)
chr6 (154-232)||(4820307-4820387)
chr6 (167-227)||(14986686-14986746)
chr6 (154-232)||(34504076-34504154)
chr6 (154-235)||(2777251-2777331)
chr6 (166-227)||(30036736-30036797)
chr6 (154-227)||(30152472-30152545)
chr6 (167-227)||(5327533-5327593)
chr6 (154-227)||(335119-335190)
chr6 (154-227)||(754380-754453)
chr6 (154-227)||(13658888-13658960)
chr6 (154-227)||(22341117-22341189)
chr6 (154-227)||(35213503-35213576)
chr6 (155-227)||(14693194-14693266)
[»] chr7 (22 HSPs)
chr7 (154-232)||(32815224-32815302)
chr7 (154-232)||(40353320-40353398)
chr7 (154-235)||(29162910-29162991)
chr7 (154-227)||(38779686-38779759)
chr7 (154-227)||(39231670-39231743)
chr7 (154-232)||(13162975-13163053)
chr7 (155-232)||(39332042-39332119)
chr7 (154-232)||(19786016-19786094)
chr7 (154-232)||(37808701-37808779)
chr7 (167-232)||(13906394-13906459)
chr7 (154-232)||(21023054-21023132)
chr7 (167-232)||(41402577-41402642)
chr7 (154-227)||(47078194-47078266)
chr7 (155-227)||(39137209-39137281)
chr7 (154-232)||(41666859-41666937)
chr7 (154-227)||(13729782-13729855)
chr7 (172-225)||(41026132-41026185)
chr7 (155-227)||(28036801-28036873)
chr7 (154-188)||(20482583-20482617)
chr7 (157-227)||(39823868-39823937)
chr7 (154-227)||(10055574-10055647)
chr7 (154-227)||(44184501-44184574)
[»] chr1 (32 HSPs)
chr1 (154-227)||(756912-756985)
chr1 (154-227)||(46172349-46172422)
chr1 (154-233)||(46082057-46082136)
chr1 (154-232)||(1852888-1852966)
chr1 (154-232)||(3603167-3603245)
chr1 (154-232)||(4514391-4514469)
chr1 (154-232)||(8411655-8411733)
chr1 (154-232)||(20565055-20565133)
chr1 (154-232)||(26837508-26837586)
chr1 (154-232)||(33024508-33024586)
chr1 (154-232)||(38303625-38303703)
chr1 (154-227)||(7128174-7128247)
chr1 (154-232)||(902694-902772)
chr1 (154-232)||(3024687-3024765)
chr1 (154-227)||(9008281-9008354)
chr1 (154-218)||(21486268-21486332)
chr1 (155-227)||(26585821-26585893)
chr1 (154-227)||(34008236-34008308)
chr1 (154-227)||(47214264-47214336)
chr1 (154-232)||(36779206-36779284)
chr1 (154-232)||(51191844-51191922)
chr1 (154-227)||(16986994-16987066)
chr1 (154-227)||(32319252-32319324)
chr1 (154-227)||(36673674-36673746)
chr1 (154-227)||(44632584-44632656)
chr1 (154-222)||(21340578-21340646)
chr1 (154-200)||(29586049-29586095)
chr1 (154-227)||(13489718-13489791)
chr1 (154-191)||(34040478-34040515)
chr1 (154-227)||(50328083-50328156)
chr1 (154-223)||(50781516-50781585)
chr1 (154-223)||(52362538-52362607)
[»] scaffold0471 (1 HSPs)
scaffold0471 (154-232)||(63-141)
[»] scaffold0449 (1 HSPs)
scaffold0449 (155-232)||(9260-9337)
[»] scaffold0321 (1 HSPs)
scaffold0321 (154-232)||(19692-19770)
[»] scaffold0204 (1 HSPs)
scaffold0204 (154-232)||(23132-23210)
[»] scaffold0014 (1 HSPs)
scaffold0014 (154-232)||(122887-122964)
[»] scaffold0687 (1 HSPs)
scaffold0687 (154-212)||(2253-2311)
[»] scaffold0136 (1 HSPs)
scaffold0136 (154-227)||(38481-38554)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 41569592 - 41569469
Alignment:
Q  7 ctgaaaagaagtggactaa-tcattgttgtgtcatgtgtggcaaatattcattttgttgtacactactcttgatgatgatttttacacgtcaaaattaac 105  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41569592 ctgaatagaagtggactaaatcattgttgtgtcatgtgtggcaaatattcattttgttgtacactactcttgatgatgatttttacacgtgaaaattaac 41569493  T
Q  106 aatgaatttaattaaggtccattt 129  Q
    ||||||||||||||||||||||||    
T  41569492 aatgaatttaattaaggtccattt 41569469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 41569411 - 41569333
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  41569411 catactcacgttactttttactttatctctctattgctatggtttccgtaccaataccacttttttctttgtaaaatat 41569333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 18176996 - 18177074
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||||||||| |||||||| |||||| |||| |||||||| |||||| ||||||||||||||||| ||||    
T  18176996 catactcacattatttttttctttatctctctattgctatggtttccgtgccaatatcacttttttctttgtaaaatat 18177074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 37257508 - 37257579
Alignment:
Q  156 tactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||| |||||||||||||||||| |||||| |||| |||||| |  |||||||||||||||||||||||    
T  37257508 tactcacattattttttactttatctctctattgctatggtttccatgacaataccacttttttctttgtaa 37257579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 433906 - 433979
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| | |||||||||||||||| |||||| ||||  |||||||  |||||||||||||||||||||||    
T  433906 catactcacatcattttttactttatctctctattgctatgatttccgtgtcaataccacttttttctttgtaa 433979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 42223967 - 42223886
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatataat 235  Q
    ||||||||| ||| |||||| ||||||| ||||||  ||| ||||||||  ||||||||||||||||||||||| |||||||    
T  42223967 catactcacattaatttttattttatctttctattgttatggtttccgtgtcaataccacttttttctttgtaaaatataat 42223886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 4952495 - 4952416
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatata 233  Q
    |||| |||| |||||||||||||||||| |||||| |||| |||| ||| ||||||| | |||||||||||||| |||||    
T  4952495 catattcacattattttttactttatctctctattgctatggttttcgtgccaatacaatttttttctttgtaaaatata 4952416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 29051668 - 29051597
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||| || |||||||||||||| |||  ||||| |||| |||||||| ||||||||||||||||||||||||    
T  29051668 catacttacattattttttactttctct--ctattgctatggtttccgtgccaataccacttttttctttgtaa 29051597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 42678805 - 42678879
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaatacc-acttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| || | |||||||| | |||||| ||||||||||||||||    
T  42678805 catactcacattattttttactttatctctctattgctttggtttccgtgcaaatacctacttttttctttgtaa 42678879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 39213785 - 39213712
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| || |||||| ||| | |||||||  |||||||||||||    
T  39213785 catactcacattattttttactttatctctctattcctttagttttcgtgcaaataccaactttttctttgtaa 39213712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 41588576 - 41588523
Alignment:
Q  15 aagtggactaatcattgttgtgtcatgtgtggcaaatattcattttgttgtaca 68  Q
    ||||||||||| | |||||||||||||||||||||| |||||||||| ||||||    
T  41588576 aagtggactaacctttgttgtgtcatgtgtggcaaagattcattttggtgtaca 41588523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 4758654 - 4758585
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttcttt 223  Q
    |||| |||| |||||||||| ||||||| |||||| ||||  ||||||| |||||| |||||||||||||    
T  4758654 catattcacattattttttattttatctctctattgctatgatttccgtgccaatatcacttttttcttt 4758585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 7552625 - 7552691
Alignment:
Q  168 tttttactttatctatctattactatagt--ttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||| ||||||| ||||||||||| ||  |||||| ||||||||||| |||||||||||| ||||    
T  7552625 tttttattttatctctctattactatggtgtttccgtgccaataccactattttctttgtaaaatat 7552691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 26277152 - 26277199
Alignment:
Q  155 atactcactttattttttactttatctatctattactatagtttccgt 202  Q
    |||||||| |||||||||||||||||| |||||| || ||||||||||    
T  26277152 atactcacattattttttactttatctctctattgctttagtttccgt 26277199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 6999083 - 6999014
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttcttt 223  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | ||||||| ||||||||||    
T  6999083 catactcacattactttttactttatctctctattgctttggttttcgtgcaaataccaattttttcttt 6999014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 31389603 - 31389676
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||| ||||||| |  |||||  ||| ||||||||  |||||| ||||||||||||||||    
T  31389603 catactcacattatttttaactttatttccctattgttatggtttccgtgacaatactacttttttctttgtaa 31389676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 36802952 - 36802989
Alignment:
Q  154 catactcactttattttttactttatctatctattact 191  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  36802952 catactcacattattttttactttatctctctattact 36802989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 5042304 - 5042382
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  5042304 catactcacattattttttactttatctctctattactatggtttccgtgccaataccacttttttctttgtaaaatat 5042382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 35099020 - 35098947
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||  |||||||||||||||||||||||    
T  35099020 catactcacattattttttactttatctctctattgctatagtttccgtgtcaataccacttttttctttgtaa 35098947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 18842336 - 18842258
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||| ||| |||||||||||||||||||||||| ||||    
T  18842336 catactcacattattttttactttatctctctattgctatggttttcgtgccaataccacttttttctttgtaaaatat 18842258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 2688991 - 2688922
Alignment:
Q  164 ttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatata 233  Q
    |||||||||||||||||| |||||| |||| |||||||| ||||||| |||||||||||||||| |||||    
T  2688991 ttattttttactttatctctctattgctatggtttccgtgccaatacaacttttttctttgtaaaatata 2688922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 33620674 - 33620737
Alignment:
Q  164 ttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||||||||||||| |||||| |||| ||||||||  |||||||||||||||||||||||    
T  33620674 ttattttttactttatctctctattgctatggtttccgtgtcaataccacttttttctttgtaa 33620737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 6931074 - 6930996
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||||||||||||||||| |||||| ||||  |||||||  |||||||||||||||||| |||| ||||    
T  6931074 catactcacattattttttactttatctctctattgctatgatttccgtgtcaataccacttttttcttcgtaaaatat 6930996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 4430951 - 4430878
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| | |||||||||||||||| |||||| |||| |||| |||  |||||||||||||||||||||||    
T  4430951 catactcacatcattttttactttatctctctattgctatggttttcgtgtcaataccacttttttctttgtaa 4430878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 8267835 - 8267762
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| || |||  ||| ||||||||  |||||||||||||||||||||||    
T  8267835 catactcacattattttttactttatctctccattgttatggtttccgtgtcaataccacttttttctttgtaa 8267762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 5821627 - 5821553
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccactt-ttttctttgtaa 227  Q
    |||||| || |||||||||||||||||| |||||  |||| |||||||| |||||||||||| ||||||||||||    
T  5821627 catacttacattattttttactttatctctctatagctatggtttccgtgccaataccactttttttctttgtaa 5821553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 16437580 - 16437506
Alignment:
Q  154 catactcactttatttttt-actttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||||||||| || |||||| ||||||  ||| |||||||| ||||||||||||||||||||||||    
T  16437580 catactcacattatttttttaccttatctctctattcatatggtttccgtgccaataccacttttttctttgtaa 16437506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 37700516 - 37700588
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||||||||||| |||||| |||||| |||| |||||||| ||||||| || |||||||||||||    
T  37700516 catactcacattattttttaccttatctctctattgctatggtttccgtgccaatactac-tttttctttgtaa 37700588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 21064241 - 21064163
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| ||||||||||||||  |||||  |||  |||||||  ||||||||||||||||||||||| ||||    
T  21064241 catactcacattactttttactttatctccctattgttatgatttccgtgtcaataccacttttttctttgtaaaatat 21064163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 43441794 - 43441867
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | ||||||| ||||||||||||||    
T  43441794 catactcacattactttttactttatctctctattgctttggttttcgtgcaaataccaattttttctttgtaa 43441867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 15267850 - 15267913
Alignment:
Q  164 ttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||||||||||||| ||||||  ||| |||| |||  ||||| |||||||||||||||||    
T  15267850 ttattttttactttatctctctattgttatggttttcgtgtcaatatcacttttttctttgtaa 15267913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 9581635 - 9581708
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| ||||||  | | |||||||| | ||||||   |||||||||||||    
T  9581635 catactcacattattttttactttatctctctattgttttggtttccgtgcaaatacctactttttctttgtaa 9581708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 19840001 - 19839928
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||| | |||||| || | |||| ||| | |||| || ||||||||||||||    
T  19840001 catactcacattattttttactttatatctctattgctttggttttcgtgcaaatatcaattttttctttgtaa 19839928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 30079902 - 30079975
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||    
T  30079902 catactcacattattttttactttatctctctattgctatagtttccgtgccaataccacttttttctttgtaa 30079975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 41486158 - 41486080
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  41486158 catactcacattactttttactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 41486080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 36111411 - 36111332
Alignment:
Q  154 catactcacttta-ttttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| ||||||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  36111411 catactcacattacttttttactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 36111332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 624327 - 624254
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| |||| |||| ||| ||||||||||||||||||||||||    
T  624327 catactcacattactttttactttatctctctattgctatggttttcgtgccaataccacttttttctttgtaa 624254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 51746277 - 51746354
Alignment:
Q  155 atactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||||| |||||||||||||||||| ||||||  ||| |||||||| |||||| ||||||||||||||||| ||||    
T  51746277 atactcacattattttttactttatctctctattgttatggtttccgtgccaatatcacttttttctttgtaaaatat 51746354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 5932172 - 5932095
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||||||||| |||||||| |||||| |||| |||||||| ||||||||| |||||||||||||| ||||    
T  5932172 catactcacattatttttt-ctttatctttctattgctatggtttccgtgccaataccatttttttctttgtaaaatat 5932095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 21260354 - 21260432
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||||||||| |||||||| ||||||  ||| |||||||| |||||||||| ||||||||||||| ||||    
T  21260354 catactcacattatttttttctttatctctctattgttatggtttccgtgccaataccacctttttctttgtaaaatat 21260432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 33899341 - 33899263
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||||||||| |||||||| ||||||  ||| |||||||| ||||||||| |||||||||||||| ||||    
T  33899341 catactcacattatttttttctttatctctctattgttatggtttccgtgccaataccatttttttctttgtaaaatat 33899263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 42959328 - 42959406
Alignment:
Q  155 atactcactttatttt-ttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||||| ||||||| ||||||||||| |||||| |||| ||||||||  ||||||||||||||||||||||| ||||    
T  42959328 atactcacattatttttttactttatctctctattgctatggtttccgtgtcaataccacttttttctttgtaaaatat 42959406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 6141793 - 6141712
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatataat 235  Q
    ||||||||| ||| | |||||||||||| | |||| ||||  ||||||| |||||||||||||||||||||||| |||||||    
T  6141793 catactcacattactctttactttatctctttattgctatgatttccgtgccaataccacttttttctttgtaaaatataat 6141712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 12112693 - 12112756
Alignment:
Q  164 ttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||||||||||||| |||||| ||||  |||||||  |||||||||||||||||||||||    
T  12112693 ttattttttactttatctctctattgctatgatttccgtgtcaataccacttttttctttgtaa 12112756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 9118879 - 9118801
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| |||| |||||||||||||||||| |||||| ||||  ||| ||| ||||||||| |||||||||||||| ||||    
T  9118879 cataatcacattattttttactttatctctctattgctatgattttcgtgccaataccatttttttctttgtaaaatat 9118801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 14451449 - 14451527
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| ||||||  ||| |||| |||  ||||||||||||||||||||||| ||||    
T  14451449 catactcacattagtttttactttatctctctattgttatggttttcgtgtcaataccacttttttctttgtaaaatat 14451527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 51194325 - 51194403
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| | | |||||||||||||| ||||||  ||| |||| ||| |||||||||||||||||||||||| ||||    
T  51194325 catactcacatcactttttactttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatat 51194403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 31076110 - 31076182
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| | |||||||||||||||| ||||||||||| ||||||||  |||||| || |||||||||||||    
T  31076110 catactcacatcattttttactttatctctctattactatggtttccgtgtcaatactac-tttttctttgtaa 31076182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 35820241 - 35820300
Alignment:
Q  168 tttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||||| ||| ||||||| |||  ||||||| ||||||||||||||||||||||||    
T  35820241 tttttactttttctctctattattatgatttccgtaccaataccacttttttctttgtaa 35820300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 47965795 - 47965871
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| ||||||||||||||  |||||  ||| |||| ||| |||||||||||||||||||||||| ||||    
T  47965795 catactcacattactttttactttatct--ctattgatatggttttcgtgccaataccacttttttctttgtaaaatat 47965871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 53152326 - 53152263
Alignment:
Q  164 ttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||||||||||||| | ||||  ||| ||||| || ||||||||||||||||||||||||    
T  53152326 ttattttttactttatctctatattgttatggtttctgtgccaataccacttttttctttgtaa 53152263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 25318080 - 25318003
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||  |||||||||||||||||| | |||| || | ||||||||  ||||||||||||||||||||||| ||||    
T  25318080 catactcatattattttttactttatctctttattgct-tggtttccgtgtcaataccacttttttctttgtaaaatat 25318003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 48335610 - 48335688
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| |||| |||||||||||||||||| | |||| ||||||||| ||| ||||||  |||||||||||| ||| ||||    
T  48335610 catattcacattattttttactttatctttatattgctatagttttcgtgccaatattacttttttctttataaaatat 48335688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 39344995 - 39344922
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | ||||||| ||||||||||||||    
T  39344995 catactcacattactttttactttatctctctattgctttggttttcgtgcaaataccaattttttctttgtaa 39344922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 50273059 - 50273010
Alignment:
Q  183 tctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  50273059 tctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 50273010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 37066044 - 37066108
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttt 218  Q
    ||||||||| |||||||||||||||||| || ||| ||||  ||||||| ||||||| |||||||    
T  37066044 catactcacattattttttactttatctctccattgctatgatttccgtgccaatactacttttt 37066108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 439275 - 439197
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||| |  ||||| ||||  ||||| | | |||||||||||||||||||||| ||||    
T  439275 catactcacattagtttttactttatttccctattgctatgatttccatacaaataccacttttttctttgtaaaatat 439197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 26206992 - 26206914
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| |||| ||| |||||||||||||| ||||||  ||| ||||| ||  || |||||||||||||||||||| ||||    
T  26206992 catattcacattactttttactttatctctctattgttatggtttctgtgtcagtaccacttttttctttgtaaaatat 26206914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 13263411 - 13263378
Alignment:
Q  155 atactcactttattttttactttatctatctatt 188  Q
    ||||||||||||||||||||||||||| ||||||    
T  13263411 atactcactttattttttactttatctctctatt 13263378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 28657456 - 28657399
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaatacc 211  Q
    ||||||||| |||||||||||||||||| |||||| || | |||||||| | ||||||    
T  28657456 catactcacattattttttactttatctctctattgctttggtttccgtgcaaatacc 28657399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 30170035 - 30169970
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccactttttt 219  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||| | | ||||||| ||| ||||    
T  30170035 catactcacattattttttactttatctctctattgctatggttttcataccaatactactctttt 30169970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 41082374 - 41082446
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||| ||||||||| |||||||||||  ||| |||  |||||| || |||||||||||||    
T  41082374 catactcacattatttttcactttatctctctattactatgattttcgtgtcaatactac-tttttctttgtaa 41082446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 2256333 - 2256281
Alignment:
Q  166 attttttactttatctatctattactatagtttccgttccaataccacttttt 218  Q
    |||||||||||||||| |||||| ||||  |||||||| |||||| |||||||    
T  2256333 attttttactttatctctctattgctatgatttccgtttcaatactacttttt 2256281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 17475946 - 17476005
Alignment:
Q  167 ttttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||||||||| |||||| |||| ||||||||  |||||| || |||||||||||||    
T  17475946 ttttttactttatctctctattgctatggtttccgtgtcaatactac-tttttctttgtaa 17476005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 45529261 - 45529183
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  45529261 catactcacattattttttactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 45529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 35564345 - 35564418
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||    
T  35564345 catactcacattattttttactttatctatctattgctataatttctgtgccaataccacttttttctttgtaa 35564418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 1633905 - 1633832
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||| ||||| || ||||||||||||||||||||||||    
T  1633905 catactcacattattttttactttatctctctattgctatggtttctgtgccaataccacttttttctttgtaa 1633832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 16966841 - 16966914
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||||||| |||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||    
T  16966841 catactcacattattttctactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaa 16966914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 11017861 - 11017940
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatata 233  Q
    ||||||||| |||||||||||||||||| ||||||  ||| |||||| | |||||||||||||||||||||||| |||||    
T  11017861 catactcacattattttttactttatctctctattgttatcgtttccatgccaataccacttttttctttgtaaaatata 11017940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 7956022 - 7955944
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| |||||| |||| |||||||  |||||||||||||||||||||||| ||||    
T  7956022 catactcacattactttttactttatctctctattgctatggtttccgcgccaataccacttttttctttgtaaaatat 7955944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 32843943 - 32843884
Alignment:
Q  168 tttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||    
T  32843943 tttttactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaa 32843884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 36110194 - 36110272
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| ||||||  ||| |||| ||| |||||||||||||||||||||||| ||||    
T  36110194 catactcacattactttttactttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatat 36110272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 11658015 - 11657938
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||| ||||||| ||||||| ||| |||||||| |||| ||||||||||||||||||| ||||    
T  11658015 catactcacattactttttattttatctctctattattatggtttccgtgccaa-accacttttttctttgtaaaatat 11657938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 30136030 - 30135952
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| |||| ||| |||||||||||||| | ||||||||| ||||||||  ||||||||||| ||||||||||| ||||    
T  30136030 catattcacattactttttactttatctctttattactatggtttccgtgtcaataccacttctttctttgtaaaatat 30135952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 40739927 - 40739850
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| |||| |||||||||||||||||| ||||||  ||| |||||||| ||||||||| |||||||||||||| ||||    
T  40739927 catattcacattattttttactttatctctctattgttatggtttccgtgccaatacca-ttttttctttgtaaaatat 40739850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 7478836 - 7478908
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||||||||||| |||||| |||||| |||| |||||||| ||||||| || |||||||||||||    
T  7478836 catactcacattattttttaccttatctctctattgctatggtttccgtgccaatactac-tttttctttgtaa 7478908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 41521024 - 41521102
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||||||||||||||||||   |||| |||| ||||| ||  |||||||||| |||||||||||| ||||    
T  41521024 catactcacattattttttactttatctcgttattgctatggtttctgtgtcaataccactattttctttgtaaaatat 41521102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 41159904 - 41159831
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| || | |||| ||| | ||||||  ||||||||||||||    
T  41159904 catactcacattattttttactttatctctctattgctttggttttcgtgcaaatacctattttttctttgtaa 41159831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 13971182 - 13971253
Alignment:
Q  156 tactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||| ||| |||  ||||||||| | |||| |||| |||||||| ||||||| ||||||||||||||||    
T  13971182 tactcacattagtttgaactttatctctatattgctatggtttccgtgccaatactacttttttctttgtaa 13971253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 7592905 - 7592963
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaatacca 212  Q
    |||| |||| |||||||||||||||||| |||||| |||| ||||||||  ||||||||    
T  7592905 catagtcacattattttttactttatctctctattgctatggtttccgtgtcaatacca 7592963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 37783986 - 37783908
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||  ||| |||||||||||||| |||||| |||   |||||||  ||||||||| ||||||||||||| ||||    
T  37783986 catactcagattactttttactttatctctctattgctaggatttccgtgtcaataccacctttttctttgtaaaatat 37783908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 7586177 - 7586105
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| ||||||  |||  ||||||| ||||| | || |||||||||||||    
T  7586177 catactcacattattttttactttatctctctattgatatgttttccgtgccaatgctac-tttttctttgtaa 7586105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 32847701 - 32847628
Alignment:
Q  155 atactcactttatttttt-actttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||| ||||||||| ||||||| | ||||||  | | ||||||||  |||||||||||||||||||||||    
T  32847701 atactcacattatttttttactttatttctctattgttgtggtttccgtggcaataccacttttttctttgtaa 32847628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 33589245 - 33589180
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccactttttt 219  Q
    ||||||||| |||||||||||||||||| || |||  ||| |||||||| |||||| || ||||||    
T  33589245 catactcacattattttttactttatctctccattgttatggtttccgtgccaatatcattttttt 33589180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 34591340 - 34591393
Alignment:
Q  174 ctttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||| | |||| |||| ||||||||  |||||||||||||||||||||||    
T  34591340 ctttatctctttattgctatggtttccgtgtcaataccacttttttctttgtaa 34591393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 36531651 - 36531723
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||  |||||||||||||||||| ||||||  |||  ||||||| ||||||| || |||||||||||||    
T  36531651 catactcatattattttttactttatctctctattgttatgatttccgtgccaatactac-tttttctttgtaa 36531723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 38234063 - 38234120
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaatacc 211  Q
    ||||||||| | |||||||||||||||| ||||||||| | |||||||| | ||||||    
T  38234063 catactcacataattttttactttatctctctattactttggtttccgtgcaaatacc 38234120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 390865 - 390943
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||||||||||||||||| |||||| |||||||||||||  ||||||||||||||||||||||| ||||    
T  390865 catactcacattattttttactttatctctctattgctatagtttccgtgtcaataccacttttttctttgtaaaatat 390943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 33375916 - 33375989
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||    
T  33375916 catactcacattattttttactttatctctctattgctatagtttccgtgccaataccacttttatctttgtaa 33375989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 44677499 - 44677426
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||    
T  44677499 catactcacattattttttactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaa 44677426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 37508513 - 37508435
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  37508513 catactcacattactttttactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 37508435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 10206988 - 10206910
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| ||| || |||| |||||||| |||||||||||||||||||||||| ||||    
T  10206988 catactcacattactttttactttatctctctgttgctatggtttccgtgccaataccacttttttctttgtaaaatat 10206910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 39020174 - 39020096
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| |||||| |||| ||||||||  ||||||||||||||||||||||| ||||    
T  39020174 catactcacattactttttactttatctctctattgctatggtttccgtgtcaataccacttttttctttgtaaaatat 39020096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 32767732 - 32767805
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||| ||||||||  |||| ||||||||||||||||||    
T  32767732 catactcacattattttttactttatctctctattgctatggtttccgtgtcaatgccacttttttctttgtaa 32767805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 49363266 - 49363187
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatata 233  Q
    ||||||||| ||| |||||||||||||| ||||||  ||| |||||||| |||||||||||||||||||| ||| |||||    
T  49363266 catactcacattactttttactttatctctctattgatatggtttccgtgccaataccacttttttctttataaaatata 49363187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 28419229 - 28419151
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||| || |||||||||||||||||| ||||||  ||| |||||| | |||||||||||||||||||||||| ||||    
T  28419229 catacttacattattttttactttatctctctattgttatggtttccatgccaataccacttttttctttgtaaaatat 28419151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 8821686 - 8821759
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||| ||||| ||  ||||| |||||||||||||||||    
T  8821686 catactcacattattttttactttatctctctattgctatggtttctgtgtcaatatcacttttttctttgtaa 8821759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 54195396 - 54195469
Alignment:
Q  155 atactcactttatttt-ttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||| |||  ||||| |||||||||||||||||    
T  54195396 atactcacattatttttttactttatctctctattactatagttttcgtgtcaatatcacttttttctttgtaa 54195469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 11633669 - 11633747
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| |||| ||| |||||||||||||| |||||| |||| |||||||| |||||||||||||| | ||||||| ||||    
T  11633669 catattcacattactttttactttatctctctattgctatggtttccgtgccaataccacttttctttttgtaaaatat 11633747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 43905029 - 43905107
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| ||||||  ||| ||||| ||  ||||||||||||||||||||||| ||||    
T  43905029 catactcacattactttttactttatctctctattgttatggtttctgtgtcaataccacttttttctttgtaaaatat 43905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 30909090 - 30909163
Alignment:
Q  159 tcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| ||| |||||||||||||| ||||||  ||| |||| ||| |||||||||||||||||||||||| ||||    
T  30909090 tcacattactttttactttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatat 30909163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 54027998 - 54028071
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||| || |||||||||||||||||| ||||||  |||  |||||||  |||||||||||||||||||||||    
T  54027998 catacttacattattttttactttatctctctattgttatgatttccgtgtcaataccacttttttctttgtaa 54028071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 22371247 - 22371319
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgta 226  Q
    |||||| || |||||||||||||||||| |||||| |||| |||||  | ||||||||| |||||||||||||    
T  22371247 catacttacattattttttactttatctctctattgctatggtttctttgccaataccaattttttctttgta 22371319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 54773755 - 54773695
Alignment:
Q  167 ttttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||||||||| ||| || |||| ||||||||  |||||||||||||||||||||||    
T  54773755 ttttttactttatctctctcttgctatggtttccgtgtcaataccacttttttctttgtaa 54773695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 39671112 - 39671034
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| ||||||  |||  |||||||  ||||| ||||||||||||||||| ||||    
T  39671112 catactcacattactttttactttatctctctattgttatgatttccgtgtcaatatcacttttttctttgtaaaatat 39671034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 36121878 - 36121955
Alignment:
Q  155 atactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||||| ||| |||||||||||||| |||||| ||||  |||  || |||||||||| ||||||||||||| ||||    
T  36121878 atactcacgttactttttactttatctctctattgctatgatttttgtgccaataccacatttttctttgtaaaatat 36121955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 46984647 - 46984582
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccactttttt 219  Q
    ||||||||  ||||||| |||||||||| ||||||  ||| |||||||| ||||||||||||||||    
T  46984647 catactcatattattttctactttatctctctattgttatggtttccgtgccaataccactttttt 46984582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 29634077 - 29634009
Alignment:
Q  164 ttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||||| |||||| ||||||  |||  ||||||| | |||||||||||||||||||||| ||||    
T  29634077 ttattttttacattatctctctattgatatgatttccgtgcaaataccacttttttctttgtaaaatat 29634009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 46982918 - 46982839
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatata 233  Q
    ||||||||  ||| ||| |||||||| | |||||| ||||  ||||||| | |||||||||||||||||||||| |||||    
T  46982918 catactcatattactttctactttatatctctattgctattatttccgtgctaataccacttttttctttgtaaaatata 46982839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 24480463 - 24480429
Alignment:
Q  157 actcactttattttttactttatctatctattact 191  Q
    |||||| ||||||||||||||||||||||||||||    
T  24480463 actcacattattttttactttatctatctattact 24480429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 26996372 - 26996435
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccactttttt 219  Q
    ||||||||| |||||||||||||||||  |||||| |||| ||||||||  |||||||| ||||||    
T  26996372 catactcacattattttttactttatc--tctattgctatggtttccgtgtcaataccattttttt 26996435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 37927220 - 37927151
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttcttt 223  Q
    ||||||||| | |||||||||||||||| |||||| || | |||||||| | ||||||  ||||||||||    
T  37927220 catactcacataattttttactttatctctctattgctttggtttccgtacaaatacctattttttcttt 37927151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 39697237 - 39697164
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | |||| || ||||||||||||||    
T  39697237 catactcacattactttttactttatctctctattgctttggttttcgtgcaaatatcaattttttctttgtaa 39697164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 39907561 - 39907488
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||| | |||||| ||||  |||||||  ||| || |||||||| |||||||    
T  39907561 catactcacattattttttactttatttctctattgctatgatttccgtgtcaacactacttttttttttgtaa 39907488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 52937239 - 52937312
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| ||||||||| |  |||  || | ||||||| ||||||||||||||    
T  52937239 catactcacattactttttactttatctctctattactttgatttttgtgcaaataccaattttttctttgtaa 52937312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 55400055 - 55400124
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttcttt 223  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | ||||||| ||||||||||    
T  55400055 catactcacattactttttactttatctctctattgctttggttttcgtgcaaataccaattttttcttt 55400124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 2075466 - 2075393
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||    
T  2075466 catactcacattattttttactttatctctctattgttatagtttccgtgccaataccacttttttctttgtaa 2075393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 11547544 - 11547471
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||| ||||||||  |||||||||||||||||||||||    
T  11547544 catactcacattattttttactttatctctctattgctatggtttccgtgtcaataccacttttttctttgtaa 11547471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 3610976 - 3610898
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| |||||| |||| ||||||||  ||||||||||||||||||||||| ||||    
T  3610976 catactcacattactttttactttatctctctattgctatggtttccgtgtcaataccacttttttctttgtaaaatat 3610898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 4820307 - 4820387
Alignment:
Q  154 catactcactttattttttactttatctatctattactata--gtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||||||||||||||||| ||||||  ||||  |||| ||| |||||||||||||||||||||||| ||||    
T  4820307 catactcacattattttttactttatctctctattgttatatggttttcgtgccaataccacttttttctttgtaaaatat 4820387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 14986746 - 14986686
Alignment:
Q  167 ttttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||||||||| | |||| |||| |||||||| ||||||||||||||||||||||||    
T  14986746 ttttttactttatctctttattgctatggtttccgtgccaataccacttttttctttgtaa 14986686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 34504076 - 34504154
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||| ||||||||| |||||| |||| ||||||||  |||||||| |||||||||||||| ||||    
T  34504076 catactcacattacttttcactttatctctctattgctatggtttccgtgtcaataccaattttttctttgtaaaatat 34504154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 2777331 - 2777251
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatataat 235  Q
    ||||||||| ||| ||||||||| |||| |||||| |||| |||||||| | |||| ||||||||||||||||| |||||||    
T  2777331 catactcacattactttttactt-atctctctattgctatggtttccgtgctaatatcacttttttctttgtaaaatataat 2777251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 30036797 - 30036736
Alignment:
Q  166 attttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||||||||||| |||| | |||| |||||||| ||||||||| ||||||||||||||    
T  30036797 attttttactttatctctctaatgctatggtttccgtgccaataccatttttttctttgtaa 30036736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 30152545 - 30152472
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| | |||||||||||||||| |||| | |||| |||||||| ||||||||| |||||| |||||||    
T  30152545 catactcacataattttttactttatctctctaatgctatggtttccgtaccaataccatttttttatttgtaa 30152472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 5327593 - 5327533
Alignment:
Q  167 ttttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||||||||| ||| || |||| ||||||||  |||||||||||||||||||||||    
T  5327593 ttttttactttatctctctcttgctatggtttccgtgtcaataccacttttttctttgtaa 5327533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 335119 - 335190
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||  |||||||| |||||||||  ||||| |||| |||||||| ||||||| ||||||||||||||||    
T  335119 catactcatattatttttaactttatct--ctattgctatggtttccgtgccaatactacttttttctttgtaa 335190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 754453 - 754380
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | |||||||  |||||||||||||    
T  754453 catactcacattactttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaa 754380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 13658888 - 13658960
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||||||||||||| |||| ||||||  ||| ||||||||  |||||| || |||||||||||||    
T  13658888 catactcacattattttttacttgatctctctattgatatggtttccgtgtcaatactac-tttttctttgtaa 13658960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 22341189 - 22341117
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| | |||||||||||||||| |||||| |||| ||||||||  | |||| || |||||||||||||    
T  22341189 catactcacatcattttttactttatctctctattgctatggtttccgtctctatactac-tttttctttgtaa 22341117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 35213576 - 35213503
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | |||||||  |||||||||||||    
T  35213576 catactcacattactttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaa 35213503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 14693266 - 14693194
Alignment:
Q  155 atactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||| |||||||||||||||||| ||| || || | |||||||| | ||||||   |||||||||||||    
T  14693266 atactcacattattttttactttatctctctgttgctttggtttccgtgcaaatacctactttttctttgtaa 14693194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 32815224 - 32815302
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||||||||||||||||| |||||| |||| ||||| || |||||||||||||||||||||||| ||||    
T  32815224 catactcacattattttttactttatctctctattgctatggtttctgtgccaataccacttttttctttgtaaaatat 32815302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 40353320 - 40353398
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||||||||| ||||||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  40353320 catactcacattattttttattttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 40353398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 29162991 - 29162910
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatataat 235  Q
    ||||||||| ||| |||||||||||||| ||||||  ||| |||||||| |||||||||||||||||||||||| |||||||    
T  29162991 catactcacattactttttactttatctctctattgttatggtttccgtgccaataccacttttttctttgtaaaatataat 29162910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 38779759 - 38779686
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||||||||||||| |||| |||||| |||| |||||||| ||||||||||||||||||||||||    
T  38779759 catactcacattattttttacttcatctctctattgctatggtttccgtgccaataccacttttttctttgtaa 38779686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 39231743 - 39231670
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||||||| |||||||||| |||||||||||||    
T  39231743 catactcacattattttttactttatctctctattgctatggtttccgtgccaataccacctttttctttgtaa 39231670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 13162975 - 13163053
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||  ||| |||||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  13162975 catactcatattactttttactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 13163053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 39332042 - 39332119
Alignment:
Q  155 atactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||||| ||| |||||||||||||| |||||| ||||  ||||||| |||||||||||||||||||||||| ||||    
T  39332042 atactcacattactttttactttatctctctattgctatgatttccgtgccaataccacttttttctttgtaaaatat 39332119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 19786094 - 19786016
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| |||||||||||||||||||||||| ||||    
T  19786094 catactcacattactttttactttatctctctattgctctggttttcgtgccaataccacttttttctttgtaaaatat 19786016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 37808779 - 37808701
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||| || |||||||||||||||||| ||||||  |||  ||||||| |||||||||||||||||||||||| ||||    
T  37808779 catacttacattattttttactttatctctctattgttatgctttccgtgccaataccacttttttctttgtaaaatat 37808701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 13906459 - 13906394
Alignment:
Q  167 ttttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||||||||| ||||||  ||| |||||||| |||||||||||||||||||||||| ||||    
T  13906459 ttttttactttatctctctattgttatggtttccgtgccaataccacttttttctttgtaaaatat 13906394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 21023132 - 21023054
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| |||| |||||||||||||||||| ||||||  ||| ||||||||   |||||||||||||||||||||| ||||    
T  21023132 catattcacattattttttactttatctctctattgttatggtttccgtgataataccacttttttctttgtaaaatat 21023054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 41402577 - 41402642
Alignment:
Q  167 ttttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||| |||| ||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  41402577 tttttttctttgtctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 41402642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 47078266 - 47078194
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||  || |||||||||||||    
T  47078266 catactcacattattttttactttatctctctattgctatggtttccgtgccaatattac-tttttctttgtaa 47078194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 39137209 - 39137281
Alignment:
Q  155 atactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||| |||||||| ||||||||| | |||| |||| |||||||| ||||||  ||||||||||||||||    
T  39137209 atactcacattatttttaactttatctctatattgctatggtttccgtaccaatattacttttttctttgtaa 39137281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 41666937 - 41666859
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| ||||||  ||| || ||||| ||||||  |||||||||||||||| ||||    
T  41666937 catactcacattactttttactttatctctctattgttatggtgtccgtgccaatattacttttttctttgtaaaatat 41666859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 13729782 - 13729855
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |  | |||| ||| | ||||||| ||||||||||||||    
T  13729782 catactcacattattttttactttatctctctattgcgttggttttcgtgcaaataccaattttttctttgtaa 13729855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 41026132 - 41026185
Alignment:
Q  172 tactttatctatctattactatagtttccgttccaataccacttttttctttgt 225  Q
    |||||| ||| |||||| |||| |||||||| ||||||||||||||||||||||    
T  41026132 tactttgtctctctattgctatggtttccgtaccaataccacttttttctttgt 41026185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 28036801 - 28036873
Alignment:
Q  155 atactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||| |||||||||||||||||| |||||| || | |||| ||| | |||||||  |||||||||||||    
T  28036801 atactcacattattttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaa 28036873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 20482583 - 20482617
Alignment:
Q  154 catactcactttattttttactttatctatctatt 188  Q
    |||||||||||||||||||||||||||| ||||||    
T  20482583 catactcactttattttttactttatctctctatt 20482617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 39823868 - 39823937
Alignment:
Q  157 actcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||| |||||||||||||||||| ||||||  |||| |||||||  |||||| || |||||||||||||    
T  39823868 actcacattattttttactttatctttctattgttataatttccgtgtcaatactac-tttttctttgtaa 39823937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 10055647 - 10055574
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| || | ||||  || | |||||||  |||||||||||||    
T  10055647 catactcacattattttttactttatctctctattgctttggtttttgtacaaataccaactttttctttgtaa 10055574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 44184574 - 44184501
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | ||||||  ||||||||||||||    
T  44184574 catactcacattactttttactttatctctctattgctttggttttcgtgcaaatacctattttttctttgtaa 44184501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 756912 - 756985
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||||| ||||||||||||||    
T  756912 catactcacattattttttactttatctctctattgctatggtttccgtgccaataccatttttttctttgtaa 756985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 46172422 - 46172349
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||| ||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||    
T  46172422 catactcacattattttttattttatctctctattgctatagttttcgtgccaataccacttttttctttgtaa 46172349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 46082136 - 46082057
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatata 233  Q
    ||||||||| ||| |||||||||||||| |||||| |||| ||||||||  ||||||||||||||||||||||| |||||    
T  46082136 catactcacattactttttactttatctctctattgctatggtttccgtgtcaataccacttttttctttgtaaaatata 46082057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 1852966 - 1852888
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||||||||| |||| ||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  1852966 catactcacattatttttttctttgtctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 1852888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 3603167 - 3603245
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||| ||||||| |||||| |||| |||||||| |||||||||||||||||||||||| ||||    
T  3603167 catactcacattactttttagtttatctctctattgctatggtttccgtgccaataccacttttttctttgtaaaatat 3603245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 4514469 - 4514391
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| |||| |||||||||||||||||| |||||| |||| |||||||| |||||| ||||||||||||||||| ||||    
T  4514469 catattcacattattttttactttatctttctattgctatggtttccgtgccaatatcacttttttctttgtaaaatat 4514391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 8411733 - 8411655
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||||||||||||||||| ||||||  | | |||||||| |||||||||||||||||||||||| ||||    
T  8411733 catactcacattattttttactttatctctctattgttttggtttccgtgccaataccacttttttctttgtaaaatat 8411655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 20565133 - 20565055
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| | |||||||||||| ||||||||||| ||||||||  ||||||||||||||||||||||| ||||    
T  20565133 catactcacattactctttactttatctctctattactatggtttccgtggcaataccacttttttctttgtaaaatat 20565055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 26837508 - 26837586
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| |||||| |||||||||| ||  ||||||||||||||||||||||| ||||    
T  26837508 catactcacgttactttttactttatctctctattgctatagtttctgtgtcaataccacttttttctttgtaaaatat 26837586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 33024586 - 33024508
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||||||||| |||||||| |||||| |||| |||||||| |||||| ||||||||||||||||| ||||    
T  33024586 catactcacattatttttttctttatctctctattgctatggtttccgtgccaatatcacttttttctttgtaaaatat 33024508  T

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Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 38303703 - 38303625
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||| | |||||||||||||||||| |||||| | || |||||||| |||||||||||||||||||||||| ||||    
T  38303703 catactcgcattattttttactttatctctctattgccatggtttccgtgccaataccacttttttctttgtaaaatat 38303625  T

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Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 7128174 - 7128247
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||| |||| ||||||| |||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||    
T  7128174 catattcacattattttctactttatctctctattgctatggtttccgtgccaataccacttttttctttgtaa 7128247  T

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Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 902694 - 902772
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| |||||| ||||  ||||||| | |||||||||||||||||||||| ||||    
T  902694 catactcacattactttttactttatctctctattgctatgatttccgtgctaataccacttttttctttgtaaaatat 902772  T

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Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 3024765 - 3024687
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||  |||||||||||||||||| |||||| |||| |||||||| |||||| || |||||||||||||| ||||    
T  3024765 catactcatattattttttactttatctctctattgctatggtttccgtgccaatatcaattttttctttgtaaaatat 3024687  T

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Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 9008281 - 9008354
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| | || |||||  | ||||||||||||||||||||||||    
T  9008281 catactcacattattttttactttatctctctattgccatggtttctatgccaataccacttttttctttgtaa 9008354  T

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Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 21486332 - 21486268
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttt 218  Q
    ||||||||| |||||||||||||||||| |||||| |||| |||||||| ||||||| |||||||    
T  21486332 catactcacattattttttactttatctctctattgctatggtttccgtgccaatactacttttt 21486268  T

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Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 26585893 - 26585821
Alignment:
Q  155 atactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    |||||||| |||||||||||||||||  ||||||  ||| ||||||||  |||||||||||||||||||||||    
T  26585893 atactcacattattttttactttatcgctctattgttatggtttccgtgtcaataccacttttttctttgtaa 26585821  T

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Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 34008236 - 34008308
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||||||||||||||||||  |||||||||| |||||| | ||||||| || |||||||||||||    
T  34008236 catactcacattattttttactttatcttactattactatggtttccatgccaatactac-tttttctttgtaa 34008308  T

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Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 47214264 - 47214336
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| ||||||  ||| |||||||| ||||||| || |||||||||||||    
T  47214264 catactcacattattttttactttatctctctattgttatggtttccgtgccaatactac-tttttctttgtaa 47214336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 36779284 - 36779206
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||| || ||| |||||||||||||| |||||| ||||  |||||||  ||||| ||||||||||||||||| ||||    
T  36779284 catacttacattactttttactttatctctctattgctatgatttccgtgtcaatatcacttttttctttgtaaaatat 36779206  T

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Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 51191844 - 51191922
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| |||  ||||||||||||| ||||||  |||  ||||||| ||||||||| |||||||||||||| ||||    
T  51191844 catactcacattacattttactttatctctctattgttatgctttccgtgccaataccatttttttctttgtaaaatat 51191922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 16986994 - 16987066
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| ||||  |||||||  |||||| || |||||||||||||    
T  16986994 catactcacattattttttactttatctttctattgctatgatttccgtgtcaatactac-tttttctttgtaa 16987066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 32319324 - 32319252
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||| |||| |||| ||||||||||| ||||||||  |||||| || |||||||||||||    
T  32319324 catactcacattatttttcacttcatctctctattactatggtttccgtgtcaatactac-tttttctttgtaa 32319252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 36673746 - 36673674
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||  |||||||||||||||||| |||||| |||| ||||||||  |||||| || |||||||||||||    
T  36673746 catactcatgttattttttactttatctctctattgctatggtttccgtgtcaatactac-tttttctttgtaa 36673674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 44632584 - 44632656
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| |||||||||||||||||| |||||| |||||| ||||||  |||| | || |||||||||||||    
T  44632584 catactcacattattttttactttatctctctattgctatagattccgtgtcaatgctac-tttttctttgtaa 44632656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 21340578 - 21340646
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctt 222  Q
    ||||||||| ||| |||||||||||||| |||||| |||| ||||||||  ||||| || |||||||||    
T  21340578 catactcacattactttttactttatctctctattgctatggtttccgtgtcaataacatttttttctt 21340646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 29586049 - 29586095
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttcc 200  Q
    ||||||||| |||||||||||||||||| ||||||| ||| ||||||    
T  29586049 catactcacattattttttactttatctctctattattatggtttcc 29586095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 13489718 - 13489791
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | |||||||  |||||||||||||    
T  13489718 catactcacattactttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaa 13489791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 34040515 - 34040478
Alignment:
Q  154 catactcactttattttttactttatctatctattact 191  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  34040515 catactcacattattttttactttatctctctattact 34040478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 50328156 - 50328083
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | |||||||  |||||||||||||    
T  50328156 catactcacgttactttttactttatctctctattgctttggttttcgtgcaaataccaactttttctttgtaa 50328083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 50781585 - 50781516
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttcttt 223  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | ||||||| ||||||||||    
T  50781585 catactcacattactttttactttatctctctattgctttggttttcgtgcaaataccaattttttcttt 50781516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 52362538 - 52362607
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttcttt 223  Q
    ||||||||| |||||||||||||||||| |||||| || | |||| ||| | |||||||  |||||||||    
T  52362538 catactcacattattttttactttatctctctattgctttggttttcgtgcaaataccaactttttcttt 52362607  T

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Target: scaffold0471 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 63 - 141
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| |||||||||||||| ||||||  ||| |||| ||| |||||||||||||||||||||||| ||||    
T  63 catactcacattactttttactttatctctctattgttatggttttcgtgccaataccacttttttctttgtaaaatat 141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 9260 - 9337
Alignment:
Q  155 atactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||||  ||| |||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||| ||| ||||    
T  9260 atactcatattactttttactttatctctctattgctataatttccgtgccaataccacttttttctttataaaatat 9337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 19692 - 19770
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    ||||||||| ||| | ||||||||||||  ||||| |||| ||||| ||  ||||||||||||||||||||||| ||||    
T  19692 catactcacattactctttactttatctccctatttctatggtttctgtatcaataccacttttttctttgtaaaatat 19770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 23132 - 23210
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||| |||| |||||||||||||||||| | |||| ||||||||| ||| ||||||  |||||||||||| ||| ||||    
T  23132 catattcacattattttttactttatctttatattgctatagttttcgtgccaatattacttttttctttataaaatat 23210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 122887 - 122964
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaacatat 232  Q
    |||||| || |||||||||||||||| | |||||| |||| |||||||| ||||||||| |||||| ||||||| ||||    
T  122887 catacttacattattttttactttatttctctattgctatggtttccgtgccaataccaatttttt-tttgtaaaatat 122964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 2253 - 2311
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaatacca 212  Q
    |||| |||| |||||||||||||||||| |||||| |||| ||||||||  ||||||||    
T  2253 catagtcacattattttttactttatctctctattgctatggtttccgtgtcaatacca 2311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 38481 - 38554
Alignment:
Q  154 catactcactttattttttactttatctatctattactatagtttccgttccaataccacttttttctttgtaa 227  Q
    ||||||||| ||| |||||||||||||| |||||| || | |||| ||| | |||||||  |||||||||||||    
T  38481 catactcacgttactttttactttatctctctattgctttggttttcgtgcgaataccaactttttctttgtaa 38554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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