View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_250 (Length: 234)

Name: NF6863A_low_250
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_250
NF6863A_low_250
[»] chr3 (27 HSPs)
chr3 (27-200)||(19414796-19414969)
chr3 (27-195)||(18165773-18165941)
chr3 (27-200)||(18147442-18147615)
chr3 (27-195)||(19464970-19465138)
chr3 (29-200)||(18873095-18873266)
chr3 (27-200)||(19437570-19437743)
chr3 (27-132)||(17942634-17942739)
chr3 (27-200)||(19334621-19334794)
chr3 (27-200)||(19376234-19376407)
chr3 (27-199)||(18109052-18109224)
chr3 (27-199)||(19400339-19400511)
chr3 (27-195)||(25463667-25463835)
chr3 (27-124)||(14895605-14895702)
chr3 (27-132)||(19381573-19381678)
chr3 (27-199)||(17950445-17950617)
chr3 (27-121)||(16677901-16677995)
chr3 (27-200)||(19393761-19393934)
chr3 (27-97)||(19439359-19439429)
chr3 (27-132)||(18116645-18116750)
chr3 (30-132)||(19425367-19425469)
chr3 (27-132)||(19461867-19461974)
chr3 (26-125)||(17726751-17726850)
chr3 (26-125)||(19027980-19028079)
chr3 (27-200)||(18016634-18016807)
chr3 (28-121)||(18104037-18104130)
chr3 (34-131)||(19354396-19354493)
chr3 (27-131)||(19352073-19352177)
[»] chr4 (2 HSPs)
chr4 (53-200)||(15536145-15536292)
chr4 (27-121)||(2709803-2709897)
[»] scaffold0648 (1 HSPs)
scaffold0648 (27-195)||(3319-3487)
[»] scaffold0640 (1 HSPs)
scaffold0640 (27-195)||(6020-6188)
[»] scaffold0274 (2 HSPs)
scaffold0274 (27-195)||(2788-2956)
scaffold0274 (27-132)||(21304-21408)
[»] chr8 (1 HSPs)
chr8 (27-193)||(8460164-8460330)
[»] chr6 (1 HSPs)
chr6 (51-131)||(13666189-13666269)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 19414969 - 19414796
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19414969 ggaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 19414870  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggttc 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19414869 tcatgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagcctattactccacaggttc 19414796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 18165941 - 18165773
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||| || ||||| ||||  ||||||||||||||| ||||||||||||||||||| |    
T  18165941 ggaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtgaaatcaaaattggtatggttccagaaaattcattttctcccaagt 18165842  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccaca 195  Q
    |||||| |   ||||| ||| || | ||||||| ||| | |||||||||| ||||||||||||||||||    
T  18165841 tcatgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagcctattactccaca 18165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 18147615 - 18147442
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    ||||||||||||||||||   ||| ||||||||||||| |||  |||||| ||||||||||||||||||||||||||| |||||||||||||||| || |    
T  18147615 ggaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagt 18147516  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggttc 200  Q
    |||||| |   ||||| |||||   |||||||||||| |||| ||| ||||| | |||||||||||||||||||    
T  18147515 tcatgatttccaattgtttccagtaagagaagtacaatggaagttccccagacaacctattactccacaggttc 18147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 19465138 - 19464970
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||||||||  ||||| |||| ||| |||||||||||| ||||||||||||| ||||| |    
T  19465138 ggaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcattttcgcccaagt 19465039  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccaca 195  Q
    |||||  |   ||||| ||| ||  |||||||| ||| | |||||||||||||||||||||||||||||    
T  19465038 tcatgttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagcctattactccaca 19464970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 18873095 - 18873266
Alignment:
Q  29 aatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaattc 128  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||    
T  18873095 aatattcccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatgtttccagaaaattcattttctcccaaattc 18873194  T
Q  129 atgactct-taattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggttc 200  Q
    | || |||  || || |||||  |||||| ||      |||||||||||||||||||||||||||||||||||    
T  18873195 aaga-tctgcaactgtttccattcagagaggtgatcttgaacttcaccagatagcctattactccacaggttc 18873266  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 19437743 - 19437570
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    ||||||||||||||||||   ||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| || |    
T  19437743 ggaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagt 19437644  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggttc 200  Q
    |||||  |   ||||| ||||    |||||||||||| |||| ||| || || | |||||||||||||||||||    
T  19437643 tcatggtttccaattgtttccggttagagaagtacaatggaagttcccctgacaacctattactccacaggttc 19437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 17942739 - 17942634
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||||||||||| ||||| ||||||||||||| |||| |||||| ||||| |   ||||||||||||||||| |||| ||||||||||||||||    
T  17942739 ggaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatggttccaaaaaactcattttctcccaaat 17942640  T
Q  127 tcatga 132  Q
    ||||||    
T  17942639 tcatga 17942634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 19334794 - 19334621
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||||||||||| | ||  ||||||||||||  | || |||||| |||||||||    |||||||| ||||| |||||||||||||||||||||    
T  19334794 ggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcattttctcccaaat 19334695  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggttc 200  Q
    | |||||||| ||||| |||||| ||||||  | |    ||||||||||||| |||||||||||||| ||||||    
T  19334694 ttatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggttc 19334621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 19376407 - 19376234
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    ||||||||||||||||||   ||| ||||||||||||| |  | |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  19376407 ggaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatggttccagaaaattcattttctcccaaat 19376308  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggttc 200  Q
    ||| || |   ||||| ||  || |||||| ||      |||||||||||||||||||||||||||| ||||||    
T  19376307 tcaagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagcctattactccataggttc 19376234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 18109224 - 18109052
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||| ||||||||| ||||| ||||||||||||| |||||||| || ||||| |   |||||||||| ||| || ||||||||||||||||||| |    
T  18109224 ggaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagt 18109125  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggtt 199  Q
    |||||| |   |||||  ||||| |||||| ||      |||||||||||||||||||||||||||| |||||    
T  18109124 tcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 18109052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 19400511 - 19400339
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||||||||||| ||||| |||||| |||||| ||||||||||| ||||| |   ||||||||||||||||  |||||||||||||||||||      
T  19400511 ggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaaga 19400412  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggtt 199  Q
    ||| ||||   |||||  ||||| |||||| ||      || ||||||||||||||||||||| |||||||||    
T  19400411 tcaagacttccaattgtctccaatcagagaggtgtcccagagcttcaccagatagcctattacgccacaggtt 19400339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 25463835 - 25463667
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||| ||||||||||| ||||  ||||||||||||| ||||||||||   ||| |||  | ||||||||||||||| ||||||||||||||||||| |    
T  25463835 ggaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatggttccagaaaattcattttctcccaagt 25463736  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccaca 195  Q
    |||||| |   |||||  ||||| |||||| ||  |   ||||||||||||||||||||||| ||||||    
T  25463735 tcatgatttccaattgtctccaatcagagaggtgtactagaacttcaccagatagcctattattccaca 25463667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 14895605 - 14895702
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaa 124  Q
    |||||| ||||||||||| |||||  ||||||||| || |||| |||||  |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  14895605 ggaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtatagttccataaaattcattttctcccaa 14895702  T

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Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 19381678 - 19381573
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||| ||||||||||| ||||| ||||||||||||| | ||||||||| | ||| |   | ||||||||||||||| |||||||||||||||||||||    
T  19381678 ggaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctgataagttcattggtatggttccagaaaattcattttctcccaaat 19381579  T
Q  127 tcatga 132  Q
    ||||||    
T  19381578 tcatga 19381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 17950617 - 17950445
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||| ||||| ||| ||||| ||||||||||||| |||||||| || ||||| |   |||||||||| ||| || ||||||||||||||||||| |    
T  17950617 ggaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagt 17950518  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggtt 199  Q
    |||||| |   |||||  ||||| |||||| ||      |||||||||||||||||||||||||||| |||||    
T  17950517 tcatgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 17950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 16677995 - 16677901
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcc 121  Q
    |||||| | ||||||||  ||||| |||||||||| || ||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||    
T  16677995 ggaatacttccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatggttccagaaaattcattttctcc 16677901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 19393934 - 19393761
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||| ||||||||| | ||  ||||||||||||| ||| ||||||| |||| ||||   | ||||||| ||||| |||||||||||| ||||||||    
T  19393934 ggaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgtttccagaaaattcattttttcccaaat 19393835  T
Q  127 tcatgactct-taattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggttc 200  Q
    |||||| |||  |||||  ||||| |||||| ||  || |||||||||||||| ||| |||||||||| ||||||    
T  19393834 tcatga-tctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactccataggttc 19393761  T

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Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 19439429 - 19439359
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtat 97  Q
    |||||||| ||||||||| |||||||||||||||| || ||| ||||||| ||||||||||||||||||||    
T  19439429 ggaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat 19439359  T

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Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 18116750 - 18116645
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||| ||||||||||| ||||| |||||| ||||||||||||||| |  ||||  ||  | | ||||||||||||| ||||||||||||||||||| |    
T  18116750 ggaatactcccttcaaattggttacctctcagtatgactacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagt 18116651  T
Q  127 tcatga 132  Q
    ||||||    
T  18116650 tcatga 18116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 19425469 - 19425367
Alignment:
Q  30 atagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaattca 129  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||| || ||||| |   | ||||||||| ||||  |||||| ||||||||||||| |||    
T  19425469 atagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatca 19425370  T
Q  130 tga 132  Q
    |||    
T  19425369 tga 19425367  T

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Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 19461974 - 19461867
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctca--atatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaa 124  Q
    |||||| ||||||||||| ||||| ||||||  |||||| ||||||||| |  ||||  ||  | | ||||||||||||| |||||||||||||||||||    
T  19461974 ggaatactcccttcaaattggttacctctcagtatatgaatacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaa 19461875  T
Q  125 attcatga 132  Q
     |||||||    
T  19461874 gttcatga 19461867  T

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Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 17726751 - 17726850
Alignment:
Q  26 aggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaa 125  Q
    |||||||| |||||||||  | ||| ||| ||||||||| | ||||||||  |||||||||   | ||||||| ||||| ||||||||||||||||||||    
T  17726751 aggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaa 17726850  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 19027980 - 19028079
Alignment:
Q  26 aggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaa 125  Q
    |||||||| |||||||||  | ||| ||| ||||||||| | ||||||||  |||||||||   | ||||||| ||||| ||||||||||||||||||||    
T  19027980 aggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaa 19028079  T

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Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 18016807 - 18016634
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||| |||||||||||   ||  ||||||||||||| |||  |||||| |||||||||   | ||||||| ||||| |||||||||||| |||||| |    
T  18016807 ggaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtgacatccctactggtatgtttccagaaaattcattttttcccaagt 18016708  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccacaggttc 200  Q
    ||||| |   |||||  |||||   ||||| ||| || |||| ||| ||||| ||| ||||| |||||||||||    
T  18016707 tcatgtcctgtaattctttccagttagagatgtataatggaagttccccagacagcttattattccacaggttc 18016634  T

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Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 18104130 - 18104037
Alignment:
Q  28 gaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcc 121  Q
    |||| |||||||||||| | ||  ||||||||||||  ||||||||||| ||||||||    | |||||| |||||| ||||||||||||||||    
T  18104130 gaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcc 18104037  T

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Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 19354493 - 19354396
Alignment:
Q  34 tcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaattcatg 131  Q
    ||||||||||| ||||  ||||||||||||| |||  ||||   ||||||||  ||||||||||||||||| ||||||| ||  ||||||| ||||||    
T  19354493 tcccttcaaattggttggctctcaatatgaccactgttaaggattgtgacattttgattggtatggttccagaaaattcgttagctcccaagttcatg 19354396  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 19352177 - 19352073
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||| |||||||||||   ||  |||| |||||||| ||| ||||||| |||||||||   |  |||||| ||||| ||||||||||||||||||| |    
T  19352177 ggaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtgacatccctaccggtatgtttccagaaaattcattttctcccaagt 19352078  T
Q  127 tcatg 131  Q
    |||||    
T  19352077 tcatg 19352073  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 15536292 - 15536145
Alignment:
Q  53 tctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaattcatgactcttaattgcttccaacca 152  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |   ||||| ||| || ||    
T  15536292 tctcaatatgaccactactaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatggtttgcaattgtttcgaagca 15536193  T
Q  153 gagaagtacaaaggaacttcaccagatagcctattactccacaggttc 200  Q
    |||| || ||  |||||||||||||| |  |||||| |||||||||||    
T  15536192 gagaggtgcattggaacttcaccagacaaactattattccacaggttc 15536145  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 2709803 - 2709897
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcc 121  Q
    ||||||||||||| |||| ||||| ||||||||||||  ||||  || |  || |||||| |||||||||| |||||| ||||||||||||||||    
T  2709803 ggaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttccagaaaattcattttctcc 2709897  T

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Target: scaffold0648 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 3319 - 3487
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||||||| ||| ||||| |||| |||||||| |||||||| |  |||| |||  ||||||||||||||||| |||| ||||||||| ||||||    
T  3319 ggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaat 3418  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccaca 195  Q
    |||||| |   ||||| |||||| |||||| ||      ||||||||||||| ||| ||||||||||||    
T  3419 tcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 3487  T

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Target: scaffold0640 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 6188 - 6020
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||||||| ||| ||||| |||| |||||||| |||||||| |  |||| |||  ||||||||||||||||| |||| ||||||||| ||||||    
T  6188 ggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaat 6089  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccaca 195  Q
    |||||| |   ||||| |||||| |||||| ||      ||||||||||||| ||| ||||||||||||    
T  6088 tcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 6020  T

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Target: scaffold0274 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 2788 - 2956
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||||||| ||| ||||| |||| |||||||| |||||||| |  |||| |||  ||||||||||||||||| |||| ||||||||| ||||||    
T  2788 ggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaat 2887  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactccaca 195  Q
    |||||| |   ||||| |||||| |||||| ||      ||||||||||||| ||| ||||||||||||    
T  2888 tcatgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 2956  T

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Target: scaffold0274; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 21408 - 21304
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||||||| ||| ||| ||||| |||| |||||||| |||||||| |  |||| |||  ||||||||||||||||| |||| ||||||||||||||||    
T  21408 ggaatagtcc-ttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttctcccaaat 21310  T
Q  127 tcatga 132  Q
    ||||||    
T  21309 tcatga 21304  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 8460330 - 8460164
Alignment:
Q  27 ggaatagtcccttcaaatcggttatctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaat 126  Q
    |||||| | ||||||||| ||||  ||||||||||||| |||||||| | | |||||||  | ||||| ||||||||| |||||| |||||||||||| |    
T  8460330 ggaatattgccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaagt 8460231  T
Q  127 tcatgactcttaattgcttccaaccagagaagtacaaaggaacttcaccagatagcctattactcca 193  Q
    | || | |   ||||| ||| || || ||| || ||  |||||||| ||||||||||||||||||||    
T  8460230 taatcatttccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactcca 8460164  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 13666189 - 13666269
Alignment:
Q  51 tctctcaatatgactacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaattcatg 131  Q
    |||||||||||||| ||||  |||||  |||| |||| ||||| ||||||||||| ||||||||||||||| || ||||||    
T  13666189 tctctcaatatgaccacttgaaagtttggtgaaatcaagattgttatggttccattaaattcattttctcctaagttcatg 13666269  T

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