View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_254 (Length: 233)
Name: NF6863A_low_254
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_254 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 48673687 - 48673920
Alignment:
| Q |
1 |
aacttactttcaaatttatcctccatataacaacacatggacaagtttgattaaaatgttgcaatttcaggatccttttagaatatcaataatgtgaggg |
100 |
Q |
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| T |
48673687 |
aacttactttcaaatttatcctccatataacaacacatggacaagtttgattaaaatgttgcaatttcaggatccttttagaatatcaataatgtgaggg |
48673786 |
T |
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| Q |
101 |
attaaattctttc-nnnnnnntgtgagggattagatttatacattgcaactaaatgattgaatttaagtggttaaagagcttccattaatatgaatcatt |
199 |
Q |
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| T |
48673787 |
attaaattctttcaaaaaaaatgtgagggattagatttatacattgcaactaaatgattgaatttaagtggttaaagagcttccattaatatgaatcatt |
48673886 |
T |
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| Q |
200 |
tggaagaatccaatttcgactcccggtggaaaca |
233 |
Q |
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| T |
48673887 |
tggaagaatccaatttcgacttcaggtgaaaaca |
48673920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 4156013 - 4156067
Alignment:
| Q |
40 |
gacaagtttgattaaaatgttgcaatttcag-gatccttttagaatatcaataat |
93 |
Q |
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| T |
4156013 |
gacaaatttgattaaaattttgcaatttcagagatcattttagaatatccataat |
4156067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 40258808 - 40258868
Alignment:
| Q |
39 |
ggacaagtttgattaaaatgttgcaatttcag-gatccttttagaatatcaataatgtgag |
98 |
Q |
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| T |
40258808 |
ggacaaatttgattaaaattttgtaatttcagagatcatttttgaatatcgataatgtgag |
40258868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 12241431 - 12241375
Alignment:
| Q |
46 |
tttgattaaaatgttgcaatttc-aggatccttttagaatatcaataatgtgaggga |
101 |
Q |
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| T |
12241431 |
tttgattaaaattttgcaatttcaagaatcattttaaaatatcgataatgtgaggga |
12241375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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