View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_256 (Length: 232)

Name: NF6863A_low_256
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_256
NF6863A_low_256
[»] chr5 (2 HSPs)
chr5 (38-209)||(37497871-37498042)
chr5 (20-86)||(37497789-37497855)
[»] chr1 (2 HSPs)
chr1 (26-193)||(31321667-31321833)
chr1 (23-89)||(31321607-31321673)
[»] chr4 (1 HSPs)
chr4 (26-195)||(42601699-42601864)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 37497871 - 37498042
Alignment:
Q  38 agaatttcatttcaccttcaactataaatagtacaagaacttgaaaatgaatacataaagaacgaaataatcaagcaaaatttatctctaaatgtatatc 137  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||||||||    
T  37497871 agaatttcatttcaccttcaaatataaatagtacaaaaacttgaaaatgaatacaaaaagaatgaaataatcaagcaaaatttatcttcaaatgtatatc 37497970  T
Q  138 tagaaatcttgactataaaattaagaacagaaagtaatattggtgtattaatacaaatctctttgaagtagt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497971 tagaaatcttgactataaaattaagaacagaaagtaatattggtgtattaatacaaatctctttgaagtagt 37498042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 37497789 - 37497855
Alignment:
Q  20 atgaataatgaatagtagagaatttcatttcaccttcaactataaatagtacaagaacttgaaaatg 86  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  37497789 atgagtaatgaatagtagagaatttcatttcaccttcaactataaatagtacaaggacttgagaatg 37497855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 31321667 - 31321833
Alignment:
Q  26 aatgaatagtagagaatttcatttcaccttcaactataaatagtacaagaacttgaaaatgaatacataaagaacgaaataatcaagcaaaatttatctc 125  Q
    ||||||| ||| ||||||||||||||||||||| || ||||||||||| ||||||||||| |||| |||||||| | |||||| ||||| || |   ||     
T  31321667 aatgaattgtaaagaatttcatttcaccttcaaatacaaatagtacaataacttgaaaataaatatataaagaatg-aataatgaagcagaaatggactt 31321765  T
Q  126 taaatgtatatctagaaatcttgactataaaattaagaaca-gaaagtaatattggtgtattaatacaa 193  Q
     |||||||||| | |||||||||||||||||||||||||||  |||||||||||| |||||||||||||    
T  31321766 caaatgtatatat-gaaatcttgactataaaattaagaacataaaagtaatattgatgtattaatacaa 31321833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 31321607 - 31321673
Alignment:
Q  23 aataatgaatagtagagaatttcatttcaccttcaactataaatagtacaagaacttgaaaatgaat 89  Q
    |||||||||||||||||||| |||||||||||||||||| | |||||||||| |||||| |||||||    
T  31321607 aataatgaatagtagagaatgtcatttcaccttcaactacagatagtacaaggacttgagaatgaat 31321673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 42601699 - 42601864
Alignment:
Q  26 aatgaatagtagagaatttcatttcaccttcaactataaatagtacaagaacttgaaaatgaatacataaagaacgaaataatcaagcaaaatttatctc 125  Q
    ||||||| |||  ||||||||||||||||||||      |||||||||  |||||| |||||||||||||| || |||||| | ||||| |||||  ||     
T  42601699 aatgaattgtaatgaatttcatttcaccttcaa------atagtacaacgacttgataatgaatacataaaaaatgaaatagtgaagcagaatttgactt 42601792  T
Q  126 taaatgtatatctagaaat-----cttgactataaaattaagaacagaaagtaatattggtgtattaatacaaat 195  Q
     |||||||||||| |||||     |||||||||||||||||||||||||   ||||||| |||||||||||||||    
T  42601793 caaatgtatatctggaaatcttgacttgactataaaattaagaacagaa---aatattgatgtattaatacaaat 42601864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University