View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_26 (Length: 410)
Name: NF6863A_low_26
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 410
Target Start/End: Original strand, 422719 - 423118
Alignment:
| Q |
14 |
agatacagtatcatccatcaaaggttgtaagtaaatcctcttagcgaccnnnnnnnnnncttgacaccaacaaatgctctcaaaatctatataccgtcta |
113 |
Q |
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| T |
422719 |
agatagagtatcatccatcaaaggttgtatgtaaatcctcttagcgaccaaaaaaaaaacttgacaccaacaaatgctctcaaaatctatataccgtcta |
422818 |
T |
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| Q |
114 |
aaaagacaaatgtattgcaaatatatgcatcctattaacaatctacacacttggagagaaagagatacagagcattctaaatcaaactttagacttcaaa |
213 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
422819 |
aaaagaccaatgtattacaaatatatgcatcctattaacaatctacacacttggagagaaagagatacaaagcattctaaataaaactttagacttcaaa |
422918 |
T |
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| Q |
214 |
agttatagaagacacacttgtatgtaccttagcctgtatgtgtcagtgagtacaaaaggaatgcaataatgaaaatggaaatagag---acaagttaata |
310 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
422919 |
agttatagaagacacacttgtatgtaccttagcttgtatgtgtcagtgagtacaaaaggaatgcaataatgaaaatggaaatagagacaacaagttaata |
423018 |
T |
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| Q |
311 |
tagatatatgaaactaaccaattcttagaatcgtcaacatttgcaagaaaggaacccaatttgtcttccctttctttcttcttaatcttcttccccttga |
410 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
423019 |
tagatatatgaaactaaccaattcttagaatcatcaacatttgcaagaaaggaacccaatttgtcttccctttctttcttcttaatcttcttccccttga |
423118 |
T |
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