View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_270 (Length: 230)
Name: NF6863A_low_270
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_270 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10922340 - 10922112
Alignment:
| Q |
1 |
atattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaaatcgactat |
100 |
Q |
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| T |
10922340 |
atattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcgttggtgatggtaaattatacaggtagtatacatagaaaatcgactat |
10922241 |
T |
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| Q |
101 |
agttgttaaaccaattgaatctgtggttagacttgattttcacaa-----caataaatacgatatgtatctacaaattttgcctccaataggcggtgagg |
195 |
Q |
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| T |
10922240 |
agttgttaaaccaattgaatctgtggttcgacttgattttcacaacactgcaataaatacgatatgtatctacaaattttgcctccaataggcggtgagg |
10922141 |
T |
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| Q |
196 |
ttgaattttgataacatgaaataagcact |
224 |
Q |
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| T |
10922140 |
ttgaagtttgataacatgaaataagcact |
10922112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 10951130 - 10951102
Alignment:
| Q |
146 |
caataaatacgatatgtatctacaaattt |
174 |
Q |
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| T |
10951130 |
caataaatacgatatgtatctacaaattt |
10951102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 45407206 - 45407119
Alignment:
| Q |
1 |
atattgctgcaactgattttgtatatatactcgtaccttgtgaatgataagcattggtgatggtacattatacaggtagtatacatagaaa |
91 |
Q |
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| T |
45407206 |
atattgctgcaactgattttgta--tataatcgtaccttgtgaatgataggtgct-atactggtacattatacatgtagtatacatagaaa |
45407119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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