View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_273 (Length: 230)
Name: NF6863A_low_273
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_273 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32912760 - 32912537
Alignment:
| Q |
1 |
aaggcttaattaaatagcatcaaatttataaaagaaaacaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912760 |
aaggcttaattaaatagcatcaaatttataaaagaaaacaataatacattacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtt |
32912661 |
T |
|
| Q |
101 |
tctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912660 |
tctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttttt |
32912561 |
T |
|
| Q |
201 |
gcatccattaaagttagccccaga |
224 |
Q |
| |
|
|||||||||||| ||||||||||| |
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| T |
32912560 |
gcatccattaaaattagccccaga |
32912537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 32924684 - 32924530
Alignment:
| Q |
50 |
tacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaatt |
149 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||| | |||||||| |||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
32924684 |
tacatacatcttcagctaggtaaaagaaagatgaagcagcaaaaagtattctctgtccacttcctcctccaccactccaaattccaccaaaagtgcaatt |
32924585 |
T |
|
| Q |
150 |
ttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
204 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| |
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| T |
32924584 |
ctgatagggacatggataattcaatttaagagcctcacgaactatctttttgcat |
32924530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 215
Target Start/End: Complemental strand, 32935684 - 32935523
Alignment:
| Q |
54 |
tacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttga |
153 |
Q |
| |
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||||||||||| ||||||| ||||| ||||| | ||||||| | || |||||| | || ||||| |||||||| ||||||| ||||||||| | | |
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| T |
32935684 |
tacatcttcagttaggtaagcgaaagctgaagtaacaaaaagtttcttttgtccactccctcctccaccattccatattccactgaaagtgcaactcgaa |
32935585 |
T |
|
| Q |
154 |
tagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaagtt |
215 |
Q |
| |
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||||||||||||| |||| |||||| ||||| ||||||||| ||||||| |||||||||| |
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| T |
32935584 |
tagggacatggatcattcactttaagaaccttaagaattatctctttgcattcattaaagtt |
32935523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 215
Target Start/End: Complemental strand, 32927366 - 32927261
Alignment:
| Q |
110 |
ttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccatt |
209 |
Q |
| |
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|||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| |||| |||||| ||||| || |||||| ||||||| ||| |
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| T |
32927366 |
ttcctcctccaccattccatatcccaccaaaagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcattcatc |
32927267 |
T |
|
| Q |
210 |
aaagtt |
215 |
Q |
| |
|
|||||| |
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|
| T |
32927266 |
aaagtt |
32927261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 32950302 - 32950186
Alignment:
| Q |
99 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
198 |
Q |
| |
|
|||||| ||| |||| ||||| || ||||| || ||||||||| | || ||| ||| |||||||||| |||| ||||||||||||| ||||||||| | |
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| T |
32950302 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacattttccataaggacatggatcattcactttaagtgccttaagaattatctct |
32950203 |
T |
|
| Q |
199 |
ttgcatccattaaagtt |
215 |
Q |
| |
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|||||| ||| |||||| |
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| T |
32950202 |
ttgcattcatcaaagtt |
32950186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 32943121 - 32943005
Alignment:
| Q |
99 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
198 |
Q |
| |
|
|||||| ||| |||| ||||| || ||||| || ||||||||| | || || ||| |||||||||| |||| ||||||||||||| ||||||||| | |
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| T |
32943121 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctct |
32943022 |
T |
|
| Q |
199 |
ttgcatccattaaagtt |
215 |
Q |
| |
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|||||| ||| |||||| |
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| T |
32943021 |
ttgcattcatcaaagtt |
32943005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 11825025 - 11824871
Alignment:
| Q |
50 |
tacatacatcttcaggtaggtaaaagaaagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaatt |
149 |
Q |
| |
|
||||||| ||| ||| ||||||||||||| |||||| ||||||||| | | |||||||| |||| ||||| ||||||||||||||||||||||||||||| |
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| T |
11825025 |
tacatacttctgcagctaggtaaaagaaaaatgaagcagcaaaaagttttctctgtccacttcctcctccaccattccaaattccaccaaaagtgcaatt |
11824926 |
T |
|
| Q |
150 |
ttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcat |
204 |
Q |
| |
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||||| ||||||||||| ||||||||||| |||| | ||| ||||||||||||| |
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| T |
11824925 |
ctgataaggacatggataattcaatttaagagcctgatgaactatctttttgcat |
11824871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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