View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_305 (Length: 222)
Name: NF6863A_low_305
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_305 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 4159944 - 4160121
Alignment:
| Q |
27 |
agatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagt |
126 |
Q |
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| T |
4159944 |
agatctcactctatttgctgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagt |
4160043 |
T |
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| Q |
127 |
gattcaaaaatgattaatttggcagtgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggt |
204 |
Q |
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| T |
4160044 |
gattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggt |
4160121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 4172034 - 4171881
Alignment:
| Q |
51 |
tttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtgattcaaaaatgattaatttggca |
150 |
Q |
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| T |
4172034 |
tttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggca |
4171935 |
T |
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| Q |
151 |
gtgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggt |
204 |
Q |
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| T |
4171934 |
ttgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggt |
4171881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 4177641 - 4177504
Alignment:
| Q |
67 |
tgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtgattcaaaaatgattaatttggcagtgaaagattgtaatt |
166 |
Q |
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| T |
4177641 |
tgggattttcttgataaaaatcctgaatataatagatcatttaatgatgcaatggctagtgattctaaattgataaacttggcattgagagattgtgatt |
4177542 |
T |
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| Q |
167 |
tggtgtttgaggggttggaatcaattgtggatgttggt |
204 |
Q |
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| T |
4177541 |
ttgtgtttgatggattggaatcaattgtggatgttggt |
4177504 |
T |
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