View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_312 (Length: 219)
Name: NF6863A_low_312
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_312 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 40010 - 40183
Alignment:
| Q |
25 |
tgaagcagcaaaacaacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtgatcctc |
124 |
Q |
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| T |
40010 |
tgaagcagcaaaacgacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtggtcctc |
40109 |
T |
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| Q |
125 |
aaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaacccttgatct |
198 |
Q |
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| T |
40110 |
aaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaacccttgatct |
40183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 33391 - 33511
Alignment:
| Q |
27 |
aagcagcaaaacaacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtgatcctcaa |
126 |
Q |
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| T |
33391 |
aagcagcaaaacgacgtggggtcgaggatctctatctatgcatggtagaagtgaccttgtcgcctaccattttcgtgtgtgaaacacttgtggttctcaa |
33490 |
T |
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| Q |
127 |
attggatagattaaatgtacc |
147 |
Q |
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| T |
33491 |
attggatagaataattgtacc |
33511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 21734 - 21828
Alignment:
| Q |
26 |
gaagcagcaaaacaacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtgat |
120 |
Q |
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| T |
21734 |
gaagaagcaaaacgacgtggggtcgaggatctctatctaaacttgttagaagtgaccttgtcgcctaccattttcgtttgtagaacacttgtgat |
21828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 19970313 - 19970209
Alignment:
| Q |
89 |
cctaccattttcgtgtgtgaaacacttgtgatcctcaaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaa |
188 |
Q |
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| T |
19970313 |
cctaccattttctgctgtgaaacacttgtggttctgaaattgtttagcatacatgtaacaactatgtttcgttcttctgttgatcttccttcgctcaaaa |
19970214 |
T |
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| Q |
189 |
ccctt |
193 |
Q |
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||||| |
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| T |
19970213 |
ccctt |
19970209 |
T |
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