View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_315 (Length: 216)
Name: NF6863A_low_315
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_315 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 21378532 - 21378359
Alignment:
| Q |
23 |
gacgatcacaaggttgacactgagtccaagtgagatcactaccagtatcaaaaacaagagacaagttccttttaggagtacccagccctacaacaacaaa |
122 |
Q |
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| T |
21378532 |
gacgagcacaaggttgacactgagtccaagtgagatcactaccagtatcaaaaacaagagacaagttccttttaggagtaccaagccctacaacaacaaa |
21378433 |
T |
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| Q |
123 |
atagttccctgttccaataaggttaccataaatagcaggtaggttaactgaagatagcttggagtgaatatagt |
196 |
Q |
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| T |
21378432 |
atagttccctgttccaataaggttaccataaatagcaggtaggttatctgaagatagcttggagtgaatatagt |
21378359 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 21404995 - 21404851
Alignment:
| Q |
29 |
cacaaggttgacactgagtccaagtgagatcactaccagtatcaaaaacaagagacaagttccttttaggagtacccagccctacaacaacaaaatagtt |
128 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||| | | |||||||||| || ||||||| |||||||||||| || |
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| T |
21404995 |
cacaaggttgacattgagtccaagtgagatcactaccagtgtcaaaaataagtgacaaatcctttttaggagttccaagccctaaaacaacaaaataatt |
21404896 |
T |
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| Q |
129 |
ccctgttccaataaggttaccataaatagcaggtaggttaactga |
173 |
Q |
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| T |
21404895 |
ccctgatccaataaggctaccagatttagctggtaggttagctga |
21404851 |
T |
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