View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_336 (Length: 205)
Name: NF6863A_low_336
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_336 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 1744177 - 1744343
Alignment:
| Q |
20 |
tcgaagaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagca |
119 |
Q |
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| T |
1744177 |
tcgaacaagatccatcctcaaactcaaatctcaacaagcctattgatttcgtgaaactgtctaaagatgatttgattcacagatccaaggtgtcggagca |
1744276 |
T |
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| Q |
120 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
186 |
Q |
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| T |
1744277 |
caaatcttttagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaaggaaac |
1744343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 29 - 182
Target Start/End: Original strand, 1738843 - 1738996
Alignment:
| Q |
29 |
atccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgattcatagatccaaggtgtcggagcacaaatcttt |
128 |
Q |
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| T |
1738843 |
atccatcttcaaactctaatttcaacaagcctcttgattttgtgaaactatctaaagaggattcgattcacatgtccaaggtgtcagagcacaaaccttt |
1738942 |
T |
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| Q |
129 |
tagcactatgcaagttggttcatcatcttgttttccaaataacaacaataaagg |
182 |
Q |
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| T |
1738943 |
tagcactatgcaagttggttcatcatctcgttttccaaataacaacaataaagg |
1738996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 1759999 - 1760035
Alignment:
| Q |
140 |
aagttggttcatcatcttgttttccaaataacaacaa |
176 |
Q |
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| T |
1759999 |
aagttggttcatcatctggttttccaaataacaacaa |
1760035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 1724247 - 1724323
Alignment:
| Q |
20 |
tcgaagaatatccatcctcaaactcaaatttcaacaagcctgttgatttcgtgaaactgtctaaagatgatttgatt |
96 |
Q |
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||||| || |||||||||||||||| |||| |||||||||| ||||| ||||| || || |||||||||| |||| |
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| T |
1724247 |
tcgaacaagatccatcctcaaactcgaattccaacaagcctagtgattatgtgaagctatcaaaagatgattcgatt |
1724323 |
T |
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