View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_337 (Length: 204)
Name: NF6863A_low_337
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_337 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 45643422 - 45643575
Alignment:
| Q |
29 |
tccaagaatatggtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaatcaaggag |
128 |
Q |
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| T |
45643422 |
tccaacaatgtggtttgttgccagagtcggcaatggcatagtgatagctaaaaagaagcataaaaccaaagcattagagaaagccattttaatcaaggaa |
45643521 |
T |
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| Q |
129 |
gctacgagaatcttgtttgagaattgagatataatgggttagctttatgtaattgc |
184 |
Q |
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| T |
45643522 |
gctacgaggatcttatttgagaattgag--ataatggtttagctttatgtaattgc |
45643575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 45702908 - 45702816
Alignment:
| Q |
29 |
tccaagaatatggtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaat |
121 |
Q |
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| T |
45702908 |
tccaacaatgtggtttgttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaat |
45702816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 45886720 - 45886628
Alignment:
| Q |
29 |
tccaagaatatggtttgttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaaagccattttaat |
121 |
Q |
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| T |
45886720 |
tccaacaatgtggtttgttgccagagtcggcaatggcatagtgatcgctaaaaagaagcataaaaccaaagccttaaagaatgtcattttaat |
45886628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 45650751 - 45650815
Alignment:
| Q |
45 |
gttgccagagtcggcaatgccatagtgatagctaaaaagaagcataaaatcaaagcattagagaa |
109 |
Q |
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| T |
45650751 |
gttgcaagagttggcactgccacattgatcactaaaaagaagcctaaaatcaaaggattagagaa |
45650815 |
T |
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