View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_341 (Length: 204)
Name: NF6863A_low_341
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_341 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 11227545 - 11227380
Alignment:
| Q |
20 |
aaacaagtcaatatataagaaaaatagtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcaca |
119 |
Q |
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| T |
11227545 |
aaacaggtcaatatataagaaaaatagtacaaagttcataaaccttaattgagttgaaaagaacaataaactatgacttatagcttattagaaaagcaca |
11227446 |
T |
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| Q |
120 |
aaatgttcatataattaaattactctaacataaaattagcatcttcatcactacagttattatgat |
185 |
Q |
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| T |
11227445 |
aaatgttcatataattaaactactctaacatgaaattagcatcttcatcactacagttattatgat |
11227380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 10128210 - 10128093
Alignment:
| Q |
23 |
caagtcaatatataagaaaaatagtacaaagttcataaaccttaattgagttgaaaagaacaata--aactatgacttatagcttattagaaaagcacaa |
120 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || |||| | | ||||| || ||||||||| ||||| |||| |
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| T |
10128210 |
caagtcgatatataagaaaaatagtacaaagttcataaacattaattgagttgaagagtacaaaaagagctatgtctgatagcttatatgaaaaacacat |
10128111 |
T |
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| Q |
121 |
aatgttcatataattaaa |
138 |
Q |
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|||||||||||||||||| |
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| T |
10128110 |
aatgttcatataattaaa |
10128093 |
T |
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