View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_342 (Length: 204)
Name: NF6863A_low_342
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_342 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 10001384 - 10001303
Alignment:
| Q |
42 |
aaattgatggtgaaatgttaatacaggtagagaatcttgaaatatgtgagaaagaaatgaaagtttgggttgagacttgaca |
123 |
Q |
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| T |
10001384 |
aaattgatggtgaaatgttaatacaggtagagaatcttgaaatatgtgagaaagaaatgaaagtttgggttgagacttgaca |
10001303 |
T |
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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 28518862 - 28518816
Alignment:
| Q |
141 |
gaaatgcttgattgaattaataaggttaccttcccttcacagaagat |
187 |
Q |
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| T |
28518862 |
gaaatgcttgattgaattaataaggttaccttcccttcacagaagat |
28518816 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 37704454 - 37704491
Alignment:
| Q |
11 |
accaaaaaggttgagttattagattggttgcaaattga |
48 |
Q |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattga |
37704491 |
T |
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