View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_35 (Length: 390)
Name: NF6863A_low_35
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 19190249 - 19190619
Alignment:
| Q |
1 |
gttacggtcttgatacccgatctaacagtggttatggaggtggacgttctggtggagcttctggtggtggttatggttctaatgggcgttccggtggtgg |
100 |
Q |
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| T |
19190249 |
gttacggtcttgataaccgatctaacagtggttatggaggtggacgttctggtggagctactggtggtggttatggttctaatggtcgttccggtggtgg |
19190348 |
T |
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| Q |
101 |
ttatgggaataataacgagagcgggtatggaggtggacgttttggtggtggttatggttccgatgaccgttctggtggtggttatggcgctaatgaccgt |
200 |
Q |
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| T |
19190349 |
ttatgggaataataacgagagcgggtatggaggtggacgttttggtggtggttatggttccgatgaccgttctggtggtggttatggcgctaatgaccgt |
19190448 |
T |
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| Q |
201 |
tatgagagtggatatgggcgttctgggggtggatatggtgatggagggcgtacgagtattggtggatatggcgaagaaaaccgttctagtggtggctatg |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190449 |
tatgagagtggatatgggcgttctggtggtggatatggtgatggagggcgttcgagtattggtggatatggcgaagaaaaccgttctagtggtggctatg |
19190548 |
T |
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| Q |
301 |
gatatggagggcgttctagtggttacggtaatgagcaaagttttggagggtatggtagggatggtcgtgat |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19190549 |
gatatggagggcgttctagtggttacggtaatgagcaaagttttggagggtatggtagggatggtcgtgat |
19190619 |
T |
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