View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_36 (Length: 390)
Name: NF6863A_low_36
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 44999076 - 44999366
Alignment:
| Q |
11 |
cagagaaaacaggggaggatgaagtaaatgtatggacaatttcttatttcattaccaagagtatcatagagaggcacacaaaccaagctatgggcgcaac |
110 |
Q |
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| T |
44999076 |
cagagaaaacaggggaggatgaagtaaatgtatggacaatttcttatattattaccaagagtatcatagagaggcacacaaaccaagctatgggcgcaac |
44999175 |
T |
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| Q |
111 |
aagcctacatacatcaacataaacaagtttatgaattataatagaacactatcatatatagaaggaaggaaaaaataaataaataaagaaatgtgagaac |
210 |
Q |
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| T |
44999176 |
aagcctacatacatcaacataaacaagtttatgaattataatagaacacaatcatatatagaaggaaggaaaaaataaataaat----aaatgtgagaac |
44999271 |
T |
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| Q |
211 |
gttatatagaaatgggaacctccattgccacaatccactgaggacaatttgatccataaactccaattcgtgagccctataattgaaattacaca |
305 |
Q |
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| T |
44999272 |
gttatatagaaatgggaacctccattgccacaatccactgaggacaatttgatccataaactccaattcgtgagccctataattgaaattacaca |
44999366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 44999400 - 44999433
Alignment:
| Q |
352 |
gacaagtccttttacattgcaaacacttacatgt |
385 |
Q |
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| T |
44999400 |
gacaagtcattttacattgcaaacacttacatgt |
44999433 |
T |
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