View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_37 (Length: 389)
Name: NF6863A_low_37
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 25 - 373
Target Start/End: Original strand, 33102087 - 33102435
Alignment:
| Q |
25 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102087 |
atgccatgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagctt |
33102186 |
T |
|
| Q |
125 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102187 |
agagtggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacc |
33102286 |
T |
|
| Q |
225 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102287 |
cttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagt |
33102386 |
T |
|
| Q |
325 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33102387 |
ttcctgaaactgctgcttctattatttcctttaaggttgattctgatgt |
33102435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 370
Target Start/End: Original strand, 52716522 - 52716718
Alignment:
| Q |
174 |
gttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgt |
273 |
Q |
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| T |
52716522 |
gttatgggaatccctcttttaagagctatgtatggtgatttctcaggaaatcttatggtacaaattgttgttcttcaaagtgttatttggtacactctta |
52716621 |
T |
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| Q |
274 |
tattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctga |
370 |
Q |
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| T |
52716622 |
tgttgtttttgtttgaatatagagctgctaaacttcttataacagaacagtttcctgaaactgcagcttctataacatcattcaaagttgattctga |
52716718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 30 - 367
Target Start/End: Complemental strand, 10838990 - 10838653
Alignment:
| Q |
30 |
atgaactataggttcatcgcagctgatacacttcaaaaaatcatcatgctccttgcacttacaatttggactaatttcacagctaatggtagcttagagt |
129 |
Q |
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||||||| |||||||| || || || ||||||||||||||||||||||| | |||||| || | ||||| ||||| ||||| | ||||| | |
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| T |
10838990 |
atgaacttcaggttcatagctgcagacacacttcaaaaaatcatcatgctagtagcactttcattatggacattgttcactaaaaatggcaatttagaat |
10838891 |
T |
|
| Q |
130 |
ggatgatcacaatcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttat |
229 |
Q |
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||||||| |||||||| || | |||||| | || ||||||||||||||||||||||| | | || |||||||||||||| ||||| |||| | | || |
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| T |
10838890 |
ggatgataacaatcttttcattatcaacacttcctaacactttggttatgggaattcctttgttaattgctatgtatggtgattattcaggtagcttaat |
10838791 |
T |
|
| Q |
230 |
ggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtgctaagcttctaattatggaacagtttcct |
329 |
Q |
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||||||||||||||||||||||||||| |||||||||||| | || | |||||||||||||| ||||||||||||||| |||| ||||| |||||||| |
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| T |
10838790 |
ggttcaagttgtggttcttcagtgtattatttggtacactcttttgctttttctttttgagtaccgtggtgctaagcttttaatcatggagcagtttcca |
10838691 |
T |
|
| Q |
330 |
gaaactgctgcttctattatttcctttaaggttgattc |
367 |
Q |
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||||| || ||||| || ||||||||||||| ||||| |
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| T |
10838690 |
gaaaccgcggcttccatcgtttcctttaaggtcgattc |
10838653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 201 - 373
Target Start/End: Original strand, 34971055 - 34971227
Alignment:
| Q |
201 |
atgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggtacactttgttattgtttctttttgagtatcgtggtg |
300 |
Q |
| |
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||||||||||| |||| |||||||||||||||||| | || |||||||| |||||||||||||| || ||| | |||||| | ||||||||| | |||| |
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| T |
34971055 |
atgtatggtgatgattctggtacccttatggttcaaatagttgttcttcaatgtatcatttggtatacattgatgttgtttttgtttgagtataggggtg |
34971154 |
T |
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| Q |
301 |
ctaagcttctaattatggaacagtttcctgaaactgctgcttctattatttcctttaaggttgattctgatgt |
373 |
Q |
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||| | |||| ||| | |||||||||||||| ||||||| ||||||||| || || || |||||||||||||| |
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| T |
34971155 |
ctaggattctcattgttgaacagtttcctgatactgctggttctattatatcattcaaagttgattctgatgt |
34971227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 25038852 - 25038959
Alignment:
| Q |
165 |
aacactttggttatgggaattccacttctcatagctatgtatggtgaatattccggtacccttatggttcaagttgtggttcttcagtgtatcatttggt |
264 |
Q |
| |
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||||||||||||||||||||||| | || | || ||||||||||||| ||| |||| | ||||| ||| |||| |||||||| ||||||||||||| |
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| T |
25038852 |
aacactttggttatgggaattcctttacttaaaggaatgtatggtgaattttcaggtagtttaatggtacaaattgttgttcttcaatgtatcatttggt |
25038951 |
T |
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| Q |
265 |
acactttg |
272 |
Q |
| |
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| T |
25038952 |
atactttg |
25038959 |
T |
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