View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_42 (Length: 381)
Name: NF6863A_low_42
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 30813335 - 30812964
Alignment:
| Q |
8 |
ggctggtggctggctctacagaaagcaagagataacgtgtttagcaataaatgctttccaaagtatgcactaccaatcataagttaaaatccaattcctt |
107 |
Q |
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| T |
30813335 |
ggctggtggctggctctacagaaagcaagagataacgtgtttagcaataaatgctttccaaagtatgcactaccaatcataagttaaaatccaattcctt |
30813236 |
T |
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| Q |
108 |
acactctggatggaattctgcaaagcttctgctctctctcgagcttgttcagccttcctcttgtttttgctcaaacttttcttataattgagcacaaatc |
207 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30813235 |
acactctggacggaattctgcaaagcttctgctctctctcgagcttgttcagccttcctcttgtttttgctcaaacttttcttataattgagcacaaatc |
30813136 |
T |
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| Q |
208 |
gatcaagctcccaaagaatctcggcatccacggcatcaaagtccacttcgatttcatcatcttgttgattcaattctaagtttttcttcctcatcatttg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30813135 |
gatcaagctcccaaagaatctcggcatccacggcatcaaagtccacttcgatttcatcatcttgttgattcaattataagtttttcttcctcatcatttg |
30813036 |
T |
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| Q |
308 |
tacaacagcatcaagtttctctacaggtaaactctggaggcttgtgcttagtttttgcttttcatcgtatgt |
379 |
Q |
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| T |
30813035 |
tacaacagcatcaagtttctctacaggtaaactatggaggcttgtgcttagtttttgcttttcatcgtatgt |
30812964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 4121163 - 4121109
Alignment:
| Q |
165 |
ctcttgtttttgctcaaacttttcttataattgagcacaaatcgatcaagctccc |
219 |
Q |
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| T |
4121163 |
ctcttgtttttgctcaaaattttattatagttgtacacaaatctatcaagctccc |
4121109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 39261669 - 39261549
Alignment:
| Q |
154 |
gttcagccttcctcttgtttttgctcaaacttttcttataattgagcacaaatcgatcaagctcccaaagaatctcggcatccacggcatcaaagtccac |
253 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||| ||| ||| ||| |||||||||||||||| |||| ||||||||| ||||| |||||| |
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| T |
39261669 |
gttcggccttcctcttgtatttgctcaaacttttcttatagttggtaacatatctatcaagctcccaaagagtctctgcatccacgctatcaatgtccac |
39261570 |
T |
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| Q |
254 |
ttcgatttcatcatcttgttg |
274 |
Q |
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||| ||||| ||||| ||||| |
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| T |
39261569 |
ttcaatttcgtcatcatgttg |
39261549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 39250579 - 39250459
Alignment:
| Q |
154 |
gttcagccttcctcttgtttttgctcaaacttttcttataattgagcacaaatcgatcaagctcccaaagaatctcggcatccacggcatcaaagtccac |
253 |
Q |
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|||| ||||||||||||| ||| ||||||||||||||||| ||| ||| ||| ||||||||||||||| |||| |||||||| ||||| |||||| |
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| T |
39250579 |
gttcggccttcctcttgtatttactcaaacttttcttatagttggtaacatatctgtcaagctcccaaagagtctctgcatccacactatcaatgtccac |
39250480 |
T |
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| Q |
254 |
ttcgatttcatcatcttgttg |
274 |
Q |
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||| ||||||||||| ||||| |
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| T |
39250479 |
ttcaatttcatcatcatgttg |
39250459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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