View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_43 (Length: 378)
Name: NF6863A_low_43
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 358
Target Start/End: Original strand, 18585304 - 18585647
Alignment:
| Q |
15 |
gacatgtctgttagttaacggaactagggtggtagaaataaactcatattatgaagaaattagttgaaggaccctgttcacagaatgattcctagagtaa |
114 |
Q |
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| T |
18585304 |
gacatgtctgttagttaacggaactagggtggtagaaataaactcatattatgaagaaattagttgaaggaccctgttcacagaatgattcctagagtaa |
18585403 |
T |
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| Q |
115 |
tagagagactgtagattctcccaatgccaaagagccccaagtctacacaaatgacaataaagatcattctccaaaggtatggttggatggatgcttttgg |
214 |
Q |
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| T |
18585404 |
tagagagactgtagattctcccaatgccaaagagccccaagtctacacaaatgacaataaagatcattctccaaaggtatggttggatggaggcttttgg |
18585503 |
T |
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| Q |
215 |
agaggaggattttggaggactaagtctacgatttggcatataattgagattttgaaagaatagcatgataaatgatcatataactttttaatcacacttg |
314 |
Q |
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| T |
18585504 |
agaggaggattttggaggactaagtctacgattaggcatataattgagattttgaaagaatagcatgataaatgatcatataactttttaatcacacttg |
18585603 |
T |
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| Q |
315 |
tccaaaagcattttataacttctttaatttagaaaagaaaaata |
358 |
Q |
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| T |
18585604 |
tctaaaagcattttataacttctttaatttagaaaagaaaaata |
18585647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 48590890 - 48590831
Alignment:
| Q |
105 |
cctagagtaatagagagactgtagattctcccaatgccaaagagccccaagtctacacaa |
164 |
Q |
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| T |
48590890 |
cctagagtattagagaaactctagattttcccagtgccaaaaagccccaagtctatacaa |
48590831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 1358747 - 1358686
Alignment:
| Q |
104 |
tcctagagtaatagagagactgtagattctcccaatgccaaagagccccaagtctacacaaa |
165 |
Q |
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| T |
1358747 |
tcctagagtatttgagagactctagactctcccaatgccaaaaggtcccaagtctatacaaa |
1358686 |
T |
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