View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_5 (Length: 526)
Name: NF6863A_low_5
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_5 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 7 - 525
Target Start/End: Complemental strand, 35743114 - 35742596
Alignment:
| Q |
7 |
agattttgcattgactcttctgatatttcttgtgttgcatcggtattttgaagtcatatcgtaatatttacacttctgcttgcttgaatttgtagttcac |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743114 |
agattttgcattgactcttctgatatttcttgtgttgcatcagtattttgaagtcagatcgtaatatttacacttctgcttgcttgaatttgtagttcac |
35743015 |
T |
|
| Q |
107 |
ttatgactctttccgatcaagaggatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743014 |
ttatgactctttccgatcaagaggatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacct |
35742915 |
T |
|
| Q |
207 |
agttgggactagtattttgtctaaacagtggaggtataagtggactaaagccccacgactttggtttagtgaggacttttttgaagagtacgaggatctc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742914 |
agttgggactagtattttgtctaaacagtggaggtataagtggactaaagccccacgactttggtttagtgaggacttttttgaagagtacgaggatctc |
35742815 |
T |
|
| Q |
307 |
gaagatctcgaagatccagtaacttataaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgact |
406 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742814 |
gaagatctcgaagatccagtaacttatagaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgact |
35742715 |
T |
|
| Q |
407 |
acaaatttgagatcacaattgaacacctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgacccacgaaacacatcc |
506 |
Q |
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| T |
35742714 |
acaaatttgagatcacaattgaacacctcgataagtggattccgattttgtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcc |
35742615 |
T |
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| Q |
507 |
cgatcaaatgctatatatt |
525 |
Q |
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||||||||||||||||||| |
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| T |
35742614 |
cgatcaaatgctatatatt |
35742596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 67 - 523
Target Start/End: Complemental strand, 35749425 - 35748963
Alignment:
| Q |
67 |
gtaatatttacacttctgcttgcttgaatttgtagttcacttatgactctttccgatcaagagg----------atcaaattgatcgaatcagtgactta |
156 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||| || | ||||| | |||| ||||||||||||||||||||| |
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| T |
35749425 |
gtaatatttacacttgtgcttgcttgaatttgtagttaccttatgactctgtctaa-caagaaggccaatcatgatcacattgatcgaatcagtgactta |
35749327 |
T |
|
| Q |
157 |
ccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtctaaacagtggaggtataagtggactaaag |
256 |
Q |
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||||| ||||| ||||| | ||||| ||| |||| ||||||||||||||||| |||||||||||||||| ||| | |||||||||| ||| ||| || |
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| T |
35749326 |
ccatgtaatgttattgatgatatcctagcacgcttgtacatcaaagacctagttaggactagtattttgtcaaaaaattggaggtatatgtgaacttcag |
35749227 |
T |
|
| Q |
257 |
ccccacgactttggtttagtgaggacttttttgaagagtacgaggatctcgaagatctcgaagatccagtaacttataaaattatcacggatgttctcat |
356 |
Q |
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|||||| |||||||||| |||| |||| |||||| |||||| |||||||| ||| | | || ||| ||| |||||| ||||| |||||||| || |
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| T |
35749226 |
ccccacaactttggtttggtgaagactattttgacgagtacaaggatctc---gattaccctggccctgtagcttctaaaatcatcacagatgttcttat |
35749130 |
T |
|
| Q |
357 |
gcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgatttgg |
456 |
Q |
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||| ||| | || |||||| |||||||| |||||||||| || |||||||||| || |||||| ||||||| |||| || |||||||||| | | | |
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| T |
35749129 |
gcaacacaacggtccgatacataagtttcatcttttcataccttatgactacaatttcaagatcataattgaattcctcagtacgtggattccgttcttg |
35749030 |
T |
|
| Q |
457 |
tcagagaggaatattaaacatctcgagcttgtgacccacgaaacacatcccgatcaaatgctatata |
523 |
Q |
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|| |||| |||||||||||||||||||| ||| | ||| ||||||| ||||||||||| ||||| |
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| T |
35749029 |
tctaggagggatattaaacatctcgagcttttgaactacggaacacatgtcgatcaaatgccatata |
35748963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 35739741 - 35739703
Alignment:
| Q |
144 |
aatcagtgacttaccatgcaatgtcattgacggcatcct |
182 |
Q |
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| T |
35739741 |
aatcagtgacttaccatgcaatgccattgacggcatcct |
35739703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 267
Target Start/End: Complemental strand, 40011283 - 40011146
Alignment:
| Q |
130 |
gatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtcta |
229 |
Q |
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||||| |||||||||||||||||||||||| | |||||||| || |||||||| ||||||| || | ||||||||| |||||||| || |||||| |
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| T |
40011283 |
gatcacattgatcgaatcagtgacttaccaagtaatgtcatcgatggcatcctagaacacttgaacgcccgagacctagtgaggactagtgttctgtcta |
40011184 |
T |
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| Q |
230 |
aacagtggaggtataagtggactaaagccccacgactt |
267 |
Q |
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| T |
40011183 |
gaaagtggaggtatatgtggattacagtcccacgactt |
40011146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 10862282 - 10862327
Alignment:
| Q |
137 |
ttgatcgaatcagtgacttaccatgcaatgtcattgacggcatcct |
182 |
Q |
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||||| |||| |||||||||||||| ||||||||||| |||||||| |
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| T |
10862282 |
ttgattgaattagtgacttaccatgtaatgtcattgatggcatcct |
10862327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 3733 - 3613
Alignment:
| Q |
130 |
gatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtcta |
229 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || |||| |||| |||| |||||| | || ||| || |||||| |
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| T |
3733 |
gatcacattgatcgaatcagtgacttaccatgtaatgtcattgatggcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtcta |
3634 |
T |
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| Q |
230 |
aacagtggaggtataagtgga |
250 |
Q |
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| T |
3633 |
gaaagtggaggtatatgtgga |
3613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 16865344 - 16865447
Alignment:
| Q |
137 |
ttgatcgaatcagtgacttaccatgcaatgtcattgacggcatcctgtcacacttggacatcaaagacctagttgggactagtattttgtctaaacagtg |
236 |
Q |
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||||||||||||||||||||||| | ||||||||||| ||||| || |||| || ||||| |||||||| | |||| |||||| | |||| | |||| |
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| T |
16865344 |
ttgatcgaatcagtgacttaccaagtaatgtcattgatggcattctacaacacctgaacatccgagacctagctaggaccagtattctatctagaaagtg |
16865443 |
T |
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| Q |
237 |
gagg |
240 |
Q |
| |
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|||| |
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|
| T |
16865444 |
gagg |
16865447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 116
Target Start/End: Original strand, 16865281 - 16865311
Alignment:
| Q |
86 |
ttgcttgaatttgtagttcacttatgactct |
116 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16865281 |
ttgcttgaatttgtagttcacttatgactct |
16865311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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