View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_50 (Length: 365)
Name: NF6863A_low_50
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 51961292 - 51960933
Alignment:
| Q |
1 |
attgcatggttgttcaatgatgttatatcacacgtttgaatgttgtgactctatcactatagtactatgctcgagttgtaaataacaaaatccaaatcct |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51961292 |
attgcatggttgttcaatgatgttatatcacatgtttgaatgttgtgactctatcactatagtactatgctcgagttgtaaataagaaaatccaaatcct |
51961193 |
T |
|
| Q |
101 |
tgagaaagtaataaatttacatcattacaaaaggatcgatgt----tgttctgtcaataagaaagactctgcttaaattaaaggtgtagctttccatcct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51961192 |
tgagaaagtaataaatttacatcattacaaaaggatcgatgtacgttgctctatcaataagaaagactctggttaaattaaaggtgtagctttccatcct |
51961093 |
T |
|
| Q |
197 |
ctcctagatcacggaagcagattctactcttttgtctcaaagtctaaatctattagacacataatttcgtcatatacaccgaagaagattcttcactttg |
296 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51961092 |
ctcctagatcacggaagcagattctactcttttgtctcaaagtctaaatctattagacacataatttcgtcatatacaccgaagaagattcttcactttg |
51960993 |
T |
|
| Q |
297 |
agcaaaaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtagt |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51960992 |
agcaaaaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtagt |
51960933 |
T |
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