View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_55 (Length: 361)
Name: NF6863A_low_55
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 31859928 - 31859608
Alignment:
| Q |
15 |
gttcactgaaaagataataagcacaccctgaaataagaagtgtcatatcaatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatc |
114 |
Q |
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| T |
31859928 |
gttcactgaaaagataataagcacaccctgaaataagaagtgtcatatcaatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatc |
31859829 |
T |
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| Q |
115 |
taagtggttacagaaaaacggcgtgctcactatggaagcatctgaatggaatggaataacacaaattctaaaagaactagttgaagcaaaaacttcaact |
214 |
Q |
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| T |
31859828 |
taagtggttacagaaaaacggcgtgctcactatggaagcatctgaatggaatggattaacacaaattctaaaagaactatttgaagcaaaaacttcaact |
31859729 |
T |
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| Q |
215 |
caaagcaacgactttgatgctcactttccagctccggagggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtctttgttg |
314 |
Q |
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| T |
31859728 |
cataacaacgactttgatactcactttccagctccggagggtctgaattctaaatttattagcatacaggaattgccaaacccaacatttgtcattgttg |
31859629 |
T |
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| Q |
315 |
ttgatattgatctactagact |
335 |
Q |
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| T |
31859628 |
tggatattgatctactagact |
31859608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 8869428 - 8869545
Alignment:
| Q |
64 |
aatgcaggtacttcttgcactgcatggcaacatgagtagattaattacatctaagtggttacagaaaaacggcgtgctcactatggaagcatctgaatgg |
163 |
Q |
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| T |
8869428 |
aatgcaggtattgcttgcactacaaggaaacatgggtagaataataacatcaaagtggttaaccaaaaaaggggtgtgcacaatggaagcatctgaatgg |
8869527 |
T |
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| Q |
164 |
aatggaataacacaaatt |
181 |
Q |
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| T |
8869528 |
aatggactaacacaaatt |
8869545 |
T |
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