View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_6 (Length: 484)

Name: NF6863A_low_6
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_6
NF6863A_low_6
[»] chr4 (3 HSPs)
chr4 (10-484)||(36915077-36915549)
chr4 (100-150)||(2982371-2982421)
chr4 (119-175)||(38475109-38475165)
[»] chr3 (5 HSPs)
chr3 (105-178)||(33057440-33057513)
chr3 (119-157)||(7023161-7023199)
chr3 (119-160)||(31566304-31566345)
chr3 (119-159)||(51450809-51450849)
chr3 (119-159)||(52136327-52136367)
[»] chr8 (3 HSPs)
chr8 (100-172)||(30453876-30453948)
chr8 (119-177)||(29520485-29520543)
chr8 (105-179)||(23492021-23492095)
[»] chr5 (4 HSPs)
chr5 (120-179)||(39668825-39668884)
chr5 (122-171)||(26916219-26916268)
chr5 (119-159)||(2078583-2078623)
chr5 (121-163)||(26916284-26916326)
[»] chr2 (5 HSPs)
chr2 (120-177)||(23714926-23714983)
chr2 (120-177)||(24102598-24102655)
chr2 (121-171)||(43920826-43920876)
chr2 (119-159)||(1648020-1648060)
chr2 (119-159)||(37520603-37520643)
[»] chr1 (3 HSPs)
chr1 (119-176)||(6985656-6985713)
chr1 (119-159)||(49350516-49350556)
chr1 (119-159)||(52920991-52921031)


Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 10 - 484
Target Start/End: Complemental strand, 36915549 - 36915077
Alignment:
Q  10 attatactcaagctatacagtgtgttactttcgattgatgatctagcattcatattctattgtatttgatccatgttatagagagtcaacttacattggt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  36915549 attatactcaagctatacagtgtgttactttcgattgatgatctagcattcatattatattgtatttgatccatgttatagag--tcaacttacattggt 36915452  T
Q  110 tgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaacagaaagttaccattcatgaacttctcattcc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36915451 tgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaacagaaagttaccattcatgaacttctcattca 36915352  T
Q  210 ttctgctgcacatctaccttacccccatacctatatgatagaggatgttagtacaattgatactattattaacttctctagttggaagatattggtaaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36915351 ttctgctgcacatctaccttacccccatacctatatgatagaggatgttagtacaattgatactattattaacttctctagttggaagatattggtaaat 36915252  T
Q  310 tgacgtaatgtgcataagctgattaattttcacaagcttatacacagagcttaatgaaatagttatgcttgctctaatattttgatttataagataggtc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36915251 tgacgtaatgtgcataagctgattaattttcacaagcttatacacaaagcttaatgaaatagttatgcttgctctaatattttgatttataagataggtc 36915152  T
Q  410 atgatcattttttatggtttgccaaagacttccttagaacttagatgcttatttcataagttctacaaatctaaa 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36915151 atgatcattttttatggtttgccaaagacttccttagaacttagatgcttatttcataagttctacaaatctaaa 36915077  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 2982371 - 2982421
Alignment:
Q  100 ttacattggttgtcgactacctaacacaaccctctccttttatctgggctt 150  Q
    ||||| ||| ||| ||||||||||| |||||||||||||||||| ||||||    
T  2982371 ttacaatggctgttgactacctaactcaaccctctccttttatccgggctt 2982421  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 38475109 - 38475165
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggct 175  Q
    |||||||||| ||||| |||| || ||||||| | |||||||||| |||||||||||    
T  38475109 cctaacacaagcctcttctttcatttgggcttggaaccggctatgcatagcaaggct 38475165  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 33057513 - 33057440
Alignment:
Q  105 ttggttgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaac 178  Q
    |||| |||||||| ||||||||||| ||||||||||||| | |||| |||||||||||| ||||||||||||||    
T  33057513 ttggctgtcgactgcctaacacaactctctccttttatcagagcttgggaccggctatgcatagcaaggctaac 33057440  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 7023199 - 7023161
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccg 157  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  7023199 cctaacacaaccctctccttttacctgggcttgggaccg 7023161  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 31566304 - 31566345
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggct 160  Q
    ||||||||||||||||||||||| | |||||| |||||||||    
T  31566304 cctaacacaaccctctccttttacccgggcttgggaccggct 31566345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 51450809 - 51450849
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggc 159  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  51450809 cctaacacaaccctctccttttacccgggcttgggaccggc 51450849  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 52136367 - 52136327
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggc 159  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  52136367 cctaacacaaccctctccttttacccgggcttgggaccggc 52136327  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 30453876 - 30453948
Alignment:
Q  100 ttacattggttgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaag 172  Q
    |||| ||||||||| ||| ||||||||||||||||| ||||||| |||||| |||||||||||| ||||||||    
T  30453876 ttacgttggttgtcaactgcctaacacaaccctctctttttatccgggcttgggaccggctatgcatagcaag 30453948  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 29520543 - 29520485
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaa 177  Q
    ||||||||||||||||||||||| | |||||| ||||| |||||| |||||||||||||    
T  29520543 cctaacacaaccctctccttttacccgggcttgggaccagctatgtatagcaaggctaa 29520485  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 23492021 - 23492095
Alignment:
Q  105 ttggttgtcgactacctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaaca 179  Q
    |||||||| |||| ||||||||||| |||||||||||| ||||||| |||  | ||||| ||| |||||||||||    
T  23492021 ttggttgttgacttcctaacacaactctctccttttatatgggcttgggatagactatgcatatcaaggctaaca 23492095  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 39668825 - 39668884
Alignment:
Q  120 ctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaaca 179  Q
    |||||||||||||| ||||||| | |||||| |||||||||||| |||||||||||||||    
T  39668825 ctaacacaaccctcaccttttacccgggcttgggaccggctatgtatagcaaggctaaca 39668884  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 26916268 - 26916219
Alignment:
Q  122 aacacaaccctctccttttatctgggctttggaccggctatgaatagcaa 171  Q
    ||||||||||||||| |||| |||||||| |||||||||||| |||||||    
T  26916268 aacacaaccctctccgtttacctgggcttgggaccggctatgcatagcaa 26916219  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 2078583 - 2078623
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggc 159  Q
    ||||||||||||||||||||||||| |||||| ||||||||    
T  2078583 cctaacacaaccctctccttttatccgggcttgggaccggc 2078623  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 26916326 - 26916284
Alignment:
Q  121 taacacaaccctctccttttatctgggctttggaccggctatg 163  Q
    |||||||||||||||||| || |||||||| ||||||||||||    
T  26916326 taacacaaccctctccttctacctgggcttgggaccggctatg 26916284  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 23714926 - 23714983
Alignment:
Q  120 ctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaa 177  Q
    ||||||||||||||| |||||| |||| ||| ||||||||||||||||| ||||||||    
T  23714926 ctaacacaaccctcttcttttacctggacttgggaccggctatgaatagtaaggctaa 23714983  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 24102598 - 24102655
Alignment:
Q  120 ctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggctaa 177  Q
    ||||||||||||||| |||||| |||| ||| ||||||||||||||||| ||||||||    
T  24102598 ctaacacaaccctcttcttttacctggacttgggaccggctatgaatagtaaggctaa 24102655  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 43920826 - 43920876
Alignment:
Q  121 taacacaaccctctccttttatctgggctttggaccggctatgaatagcaa 171  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||| |||||||    
T  43920826 taacacaaccctctccttttacctgggattttgaccggctatgcatagcaa 43920876  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 1648060 - 1648020
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggc 159  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  1648060 cctaacacaaccctctccttttacccgggcttgggaccggc 1648020  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 37520643 - 37520603
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggc 159  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  37520643 cctaacacaaccctctccttttacccgggcttgggaccggc 37520603  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 6985656 - 6985713
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggctatgaatagcaaggcta 176  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||  ||||||||||||    
T  6985656 cctaacacaaccctctcctttcatccgggcttgggaccggctattcatagcaaggcta 6985713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 49350516 - 49350556
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggc 159  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  49350516 cctaacacaaccctctccttttacctgggcttgggaccggc 49350556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 52921031 - 52920991
Alignment:
Q  119 cctaacacaaccctctccttttatctgggctttggaccggc 159  Q
    ||||||||||||||||||||||| | |||||| ||||||||    
T  52921031 cctaacacaaccctctccttttacccgggcttgggaccggc 52920991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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