View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_62 (Length: 354)
Name: NF6863A_low_62
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 6917763 - 6917429
Alignment:
| Q |
1 |
gaaacagcatccatgtctgccaagaacaggcatgaaatagtgcaaaaattaggtagcaattggcactgcacaatatcttagtggaaactgagtgtttgtg |
100 |
Q |
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| T |
6917763 |
gaaacatcatgcatatgtgccaagaacagtcatcaaatagtgcaaaaattacttatcacttggccctgcaccatctcttagtggaaactgagtgtttgtg |
6917664 |
T |
|
| Q |
101 |
atcaatattattattgaataataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaagcaaaaggaaaatcagaacctatatgtttcgg |
200 |
Q |
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| T |
6917663 |
atcaatattattattgaataataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaagcaaatggaaaatcagaacctatatgtttcga |
6917564 |
T |
|
| Q |
201 |
aatcaacctcgccgcgctcaatcttgatggcctggaacttgcctttctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917563 |
aatcaacctcgccgcgctcaatcttgatggcctggaacttgccattctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcg |
6917464 |
T |
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| Q |
301 |
tctccggatagtacctgtttcctgttgcagaactg |
335 |
Q |
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||||||||||||||||||| ||||||||||||||| |
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| T |
6917463 |
tctccggatagtacctgttccctgttgcagaactg |
6917429 |
T |
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