View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_64 (Length: 347)
Name: NF6863A_low_64
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_64 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 5 - 347
Target Start/End: Complemental strand, 402113 - 401769
Alignment:
| Q |
5 |
actgagatgaagcggatgcaagatggggactttgtgtgtgtg--atggtgtgctgggaggctgctaacccaaacaattggtttctgtgtttgaagggtgt |
102 |
Q |
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| T |
402113 |
actgagatgaagctgatgcaagatgggaactttgtgtgtgtgtgatggtgtgctgggaggctgctaacccaaacaattggtttctgtgtttgaagggtgt |
402014 |
T |
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| Q |
103 |
tggaagaccnnnnnnnnctctcccaattgcttgaagccggctggtttaactgggaataaaatcgagattgtatttatgagatgccagaataaatacttgc |
202 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
402013 |
tggaagaccaaaaaaaactctctcaattgcttgaagccggctggtttaactgtggataaaatcgagattgtatttatgagatgccagaataaatatttgc |
401914 |
T |
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| Q |
203 |
tggttttcggagatttcattcaacgaaacattataggtctcaatcttcgaaccctttcaggtggaacaaacctctgaagtcttgccaatatagcgcctat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
401913 |
tggttttcggagatttcattcaacgaaacattataggtctcaatcttcgaaccctttcagatggaacaaacctctgaagtcttgccaatatagcgcctat |
401814 |
T |
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| Q |
303 |
ggctatgggatgtggctgttgtgctggaatgggagagggctgtga |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401813 |
ggctatgggatgtggctgttgtgctggaatgggagagggctgtga |
401769 |
T |
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