View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_65 (Length: 346)
Name: NF6863A_low_65
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 51873971 - 51873632
Alignment:
| Q |
1 |
gccatctttgaagttcattttgatcttgaacttcatcatgaggagggtcatttatgagtagtttgggatcagaagttatgaggttggtttgtgtgggaca |
100 |
Q |
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| T |
51873971 |
gccatctttgaagttcattttgatcttgaacttcatcatgaggagggtcatttatgagtagtttaggatcagaagttatgaggttggtttgtgtgggaca |
51873872 |
T |
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| Q |
101 |
gagaaatggggatggcttaggtttacacatatctcactagcaagtagttttggatatgtacaaaggatagaatatacaagagctaccactgctcttgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51873871 |
gagaaatggggatggcttaggtttacacatatctcactagcaagtagttttggatatgtacaaaggatagaatatacaagagctaccactgctcttgctt |
51873772 |
T |
|
| Q |
201 |
ctagcttaggcttagtgatcgtggatggattgtgtttgaagctgtttgagaagatgtaagagttttgtgtattttgtatgggaggaagatgatgaaggtg |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51873771 |
ctagcttaggcttagtgatcgtggatggactgtgtttgaagctgtttgagaagatgtaagaggtttgtgtattttgtatgggaggaagatgatgaaggtg |
51873672 |
T |
|
| Q |
301 |
agtgtgtgtttttatgcatgaagaaaggtttgggccctac |
340 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
51873671 |
agtgtgtgtttttatgcatgaagaaaggcttgggccctac |
51873632 |
T |
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