View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_74 (Length: 332)
Name: NF6863A_low_74
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 19808795 - 19808488
Alignment:
| Q |
19 |
tgatagaaactggtaccaataggataaataactgaatattattgtttattattgaatattctctggggaaaggttccctaatcagagataaatatacaat |
118 |
Q |
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| T |
19808795 |
tgatagaaactggtaccaataggataaacaactgaatattattgtttattattgaatattctctggggaaaggtttcctaatcagagataaatatacaat |
19808696 |
T |
|
| Q |
119 |
cacacacttgtatagaattgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacaca |
218 |
Q |
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| T |
19808695 |
cacacacttgtaatgaattgaaattacacagaaatattcacagtacacactcacaaggttccgagagccttgtgtctctccttttccaatgaaccacaca |
19808596 |
T |
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| Q |
219 |
ataattctaagataactattaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaataactgctaaataataa |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19808595 |
ataattctaagataactattaagtctgactattctttatttatataacagaata--cacattctagaaaataactgcacacaataactgttaaataataa |
19808498 |
T |
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| Q |
319 |
cttctgcaca |
328 |
Q |
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|| ||||||| |
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| T |
19808497 |
ctactgcaca |
19808488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 15156766 - 15156933
Alignment:
| Q |
137 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacacaataattctaagataacta |
236 |
Q |
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| T |
15156766 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcaagagccttgtgtctctcctttcctaatgaaccacacaataattctaagataacta |
15156865 |
T |
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| Q |
237 |
ttaagtctgacttttctttatttatataacagaatacacacattc-tagaaaataactgcacacaata |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
15156866 |
ttaagtctgacttttctttatttatataacagaatacacacattcttagaaaataacagcacacaata |
15156933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 25555763 - 25555605
Alignment:
| Q |
137 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacacaataattctaagataacta |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||| ||||||||| ||||| || |
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| T |
25555763 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcaagatccttgtgtctctcctttcctaatgagccacacaatgattct--------ta |
25555672 |
T |
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| Q |
237 |
ttaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata |
303 |
Q |
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| T |
25555671 |
ttaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaata |
25555605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 25549376 - 25549308
Alignment:
| Q |
235 |
tattaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
25549376 |
tattaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaata |
25549308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 20011066 - 20011224
Alignment:
| Q |
137 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacacaataattctaagataacta |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| ||||||||| ||||| || |
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| T |
20011066 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcaagagccttgtgtctttcctttcctaatgagccacacaatgattct--------ta |
20011157 |
T |
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| Q |
237 |
ttaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
20011158 |
ttaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaata |
20011224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 22621179 - 22621337
Alignment:
| Q |
137 |
tgaaatcacacagaaatattcacagtacacactcacaaggtttcgagagcattgtgtctctccttttctaatgaaccacacaataattctaagataacta |
236 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||| ||||||| ||||||||| ||||| || |
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| T |
22621179 |
tgaaatcacacagaaatattcacagtacatactcacaaggtttcaagaaccttgtgtctctcctttcctaatgagccacacaatgattct--------ta |
22621270 |
T |
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| Q |
237 |
ttaagtctgacttttctttatttatataacagaatacacacattctagaaaataactgcacacaata |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
22621271 |
ttaagtctgacttttctttatttatataacagaatacacacattctataaaataacagcacacaata |
22621337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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