View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_75 (Length: 331)

Name: NF6863A_low_75
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_75
NF6863A_low_75
[»] chr2 (6 HSPs)
chr2 (10-330)||(11821182-11821502)
chr2 (10-327)||(11834865-11835182)
chr2 (8-203)||(11933708-11933903)
chr2 (8-203)||(11946929-11947124)
chr2 (125-203)||(11917654-11917732)
chr2 (125-197)||(8338659-8338731)
[»] chr4 (10 HSPs)
chr4 (8-161)||(38125495-38125648)
chr4 (10-197)||(36107919-36108106)
chr4 (8-192)||(38090661-38090845)
chr4 (15-202)||(21482656-21482843)
chr4 (56-191)||(36080101-36080236)
chr4 (10-197)||(36100660-36100847)
chr4 (8-161)||(38129448-38129601)
chr4 (56-197)||(34971539-34971680)
chr4 (143-197)||(36090229-36090283)
chr4 (10-69)||(38081842-38081901)
[»] chr6 (1 HSPs)
chr6 (10-197)||(6838680-6838867)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 330
Target Start/End: Original strand, 11821182 - 11821502
Alignment:
Q  10 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821182 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta 11821281  T
Q  110 agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtcttatactgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821282 agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtcttatactgt 11821381  T
Q  210 taaattagtagcggttcctgaaaccgttactgtttttcgtattgagaaaactttggaacagaatgctactgatcttgttgttcaatggcaacaagttgcg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11821382 taaattagtagcggttcctgaaaccgttactgtttttcgtattgagaaaactttggaacagaatgctactgatcttgttgttcaatggcaacaagttgcg 11821481  T
Q  310 ccgacaacggctaataggctt 330  Q
    |||||||||| ||||||||||    
T  11821482 ccgacaacggataataggctt 11821502  T

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Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 11835182 - 11834865
Alignment:
Q  10 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta 109  Q
    ||||||||||||||  |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11835182 ggtgttggtggtcacgtcagtggtggagggtatggtgcaatgttgagaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta 11835083  T
Q  110 agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtcttatactgt 209  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||  |    
T  11835082 agggaaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatacgaggcggtggtggtgctagttttggtgttgttctgtcttataccat 11834983  T
Q  210 taaattagtagcggttcctgaaaccgttactgtttttcgtattgagaaaactttggaacagaatgctactgatcttgttgttcaatggcaacaagttgcg 309  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||     
T  11834982 taaattagtagcggttcctaaaaccgttactgttttccgaattgagaaaacattggaacagaatgcaactgatcttgttgttcaatggcaacaagttgct 11834883  T
Q  310 ccgacaacggctaatagg 327  Q
    || ||||| | |||||||    
T  11834882 ccaacaactgataatagg 11834865  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 11933708 - 11933903
Alignment:
Q  8 ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt 107  Q
    |||||||||| || ||||| |||||||| || |||||||  ||| || ||||||||||| | || |||||||||||||| |||||  ||||  | |||||    
T  11933708 ttggtgttggaggacatttaagtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgt 11933807  T
Q  108 taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctta 203  Q
    ||| |||||  |  |  |||| ||||||||||| ||||||||||||||||||||   |||||||||||| ||||| || ||||||||||| |||||    
T  11933808 taatggtagattgcttgatagaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttctta 11933903  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 11946929 - 11947124
Alignment:
Q  8 ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt 107  Q
    |||||||||| || ||||| |||||||| || |||||||  ||| || ||||||||||| | || |||||||||||||| |||||  ||||  | |||||    
T  11946929 ttggtgttggaggacatttaagtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgt 11947028  T
Q  108 taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctta 203  Q
    ||| |||||  |  |  |||| ||||||||||| ||||||||||||||||||||   |||||||||||| ||||| || ||||||||||| |||||    
T  11947029 taatggtagattgcttgatagaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttctta 11947124  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 11917654 - 11917732
Alignment:
Q  125 ataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctta 203  Q
    |||| ||||||||||| |||||||||||||||||||||  |||||||||||| ||||  || ||||||||||| |||||    
T  11917654 atagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttctta 11917732  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 8338659 - 8338731
Alignment:
Q  125 ataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct 197  Q
    |||| ||||||||||| |||||||| |||||||||||    |||||||||||||||||||| |||||| ||||    
T  8338659 atagaaaatcaatgggagaagatctgttttgggctattaggggtggtggtggtgctagttttggtgttattct 8338731  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 38125495 - 38125648
Alignment:
Q  8 ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt 107  Q
    |||||||||||||||| || |||||||||||||||||||  ||| || |||||| ||| || ||| |||||||| || ||||||||||||||||||||||    
T  38125495 ttggtgttggtggtcacttgagtggtggagggtatggtaacatgatgagaaaatttgggttgtctattgataatgttgttgatgctgaaattgttgatgt 38125594  T
Q  108 taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctat 161  Q
    ||| |||||| || |  |||||||||||||||||||||| ||||||||||||||    
T  38125595 taatggtaggattcttgataggaaatcaatgggtgaagaacttttttgggctat 38125648  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 36107919 - 36108106
Alignment:
Q  10 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta 109  Q
    |||| |||||||||||||  |||||| ||||||||||   || || |||||| |||| | |||||||||||||||||||||||  |||| ||||||||||    
T  36107919 ggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgataatattattgatgcaaaaatggttgatgtta 36108018  T
Q  110 agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct 197  Q
    ||||||   || |  |||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||| |||||| ||||    
T  36108019 agggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattct 36108106  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 38090661 - 38090845
Alignment:
Q  8 ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt 107  Q
    ||||||||||||| ||||| |||||||| ||||||||||  ||| || |||||| ||| |||||||||||||||||| | |||||| | |||||||||||    
T  38090661 ttggtgttggtggacattttagtggtggggggtatggtaacatgatgagaaaatttgggttatctgttgataatattttggatgctaagattgttgatgt 38090760  T
Q  108 taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgtt 192  Q
    | | || ||  |  |  ||||| |||||||||| |||||| |||||||||||||   |||||||||||| |||||||| ||||||    
T  38090761 tgatggaagagtgcttgatagggaatcaatgggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgtt 38090845  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 21482656 - 21482843
Alignment:
Q  15 tggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggt 114  Q
    ||||||||||||   |||||| || ||||| |  ||| || |||||| |||| | |||||||||||||||||||| ||  ||||||||||||| || |||    
T  21482656 tggtggtcatttttctggtggtggatatggaaatatgatgagaaaatttggtctttctgttgataatattattgacgcaaaaattgttgatgtgaatggt 21482755  T
Q  115 aggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctt 202  Q
    |   |  |  |||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||  |||||| || ||||||    
T  21482756 aatatccttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttatggtgttattttgtctt 21482843  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 36080101 - 36080236
Alignment:
Q  56 gaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggtaggcttttgaataggaaatcaatgggtgaagatcttttttg 155  Q
    |||||| |||| |||||||||||||||| ||||| ||  |||||||||||||||| |||||  || |  |||| ||||||||||| |||||| | |||||    
T  36080101 gaaaatttggtctatctgttgataatataattgacgcaaaaattgttgatgttaatggtagtattcttgatagaaaatcaatgggagaagatttattttg 36080200  T
Q  156 ggctatactaggtggtggtggtgctagtttcggtgt 191  Q
    |||||||   |||||||||||||| ||||| |||||    
T  36080201 ggctataaggggtggtggtggtgcaagttttggtgt 36080236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 36100660 - 36100847
Alignment:
Q  10 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta 109  Q
    |||| |||||||||||||  |||||| ||||||||||   || || |||||| |||| | ||| |||||||||| ||||||||  ||||||||||||| |    
T  36100660 ggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctattgataatatcattgatgcaaaaattgttgatgtca 36100759  T
Q  110 agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct 197  Q
    | ||||   |  |  |||| || |||||||| |||||||| ||||||||||||   |||||||||||||||||||| |||||| ||||    
T  36100760 atggtaatatccttgatagaaagtcaatgggagaagatctattttgggctataaggggtggtggtggtgctagttttggtgttattct 36100847  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 38129448 - 38129601
Alignment:
Q  8 ttggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgt 107  Q
    ||||||||||||| ||||| ||||| |||||||||||||  ||| || ||||||  || |||||| ||||||||||| |||||||| ||||| |||||||    
T  38129448 ttggtgttggtggccatttgagtggaggagggtatggtaacatgatgagaaaattcgggttatctattgataatattgttgatgctaaaattattgatgt 38129547  T
Q  108 taagggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctat 161  Q
     || |||||  || |  | | |||| | ||||| ||||||||||||||||||||    
T  38129548 caatggtagaattcttgacaagaaaactatgggggaagatcttttttgggctat 38129601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 34971680 - 34971539
Alignment:
Q  56 gaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgttaagggtaggcttttgaataggaaatcaatgggtgaagatcttttttg 155  Q
    |||||| |||| | ||| |||||||||| ||||| ||  ||||||||||||| || ||||   || |  |||| || |||||||| |||||||| |||||    
T  34971680 gaaaatttggtctttctattgataatatcattgacgcaaaaattgttgatgtcaatggtaatattcttgatagaaagtcaatgggagaagatctcttttg 34971581  T
Q  156 ggctatactaggtggtggtggtgctagtttcggtgttgttct 197  Q
    ||||||   ||||||||||||||||||||| |||||| ||||    
T  34971580 ggctatcagaggtggtggtggtgctagttttggtgttattct 34971539  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 36090283 - 36090229
Alignment:
Q  143 aagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct 197  Q
    ||||||||||||||||||||  |||||||||||| |||||||| |||||| ||||    
T  36090283 aagatcttttttgggctataagaggtggtggtggggctagttttggtgttattct 36090229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 38081842 - 38081901
Alignment:
Q  10 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggttta 69  Q
    ||||||||||| |||||||||||||| || ||||| ||  ||||||| ||||||||||||    
T  38081842 ggtgttggtggacatttcagtggtggcggctatggaaccttgttgcgtaaatatggttta 38081901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 6838680 - 6838867
Alignment:
Q  10 ggtgttggtggtcatttcagtggtggagggtatggtacaatgttgcgaaaatatggtttatctgttgataatattattgatgctgaaattgttgatgtta 109  Q
    |||| |||||||||||||  |||||| |||||||| |   || || |||||| |||| | ||| |||||||||||||||| ||  |||||||||||||||    
T  6838680 ggtgctggtggtcatttctctggtggtgggtatggaaatttgatgagaaaatttggtctttctattgataatattattgacgcaaaaattgttgatgtta 6838779  T
Q  110 agggtaggcttttgaataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttct 197  Q
    ||||||   || |  |||| ||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||| |||||| ||||    
T  6838780 agggtaatattcttgatagaaaatcaatgggagaagatcttttttgggccataagaggtggtggtggtgctagttttggtgttattct 6838867  T

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