View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6863A_low_76 (Length: 331)
Name: NF6863A_low_76
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6863A_low_76 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 49330860 - 49330543
Alignment:
| Q |
1 |
atcaaatggaggaatagatacaaaacaacaaatcaacttattcattgatatcctcctagtcaacacatgtgatgtattaattcccttcttgcgaacggca |
100 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| |||||| |||||| ||| |||||||||||||||||| ||||||||||||||||| || |
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| T |
49330860 |
atcacatggaggaatagatacaaaacaacaattcaacttgttcattactatcct---agttaacacatgtgatgtattacttcccttcttgcgaacgaca |
49330764 |
T |
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| Q |
101 |
tagtaacataaaccaaacattataattttcctttgtaattttttgacattgttttgctaaattcttcaaataaaaaacagcgaaattgttcagttgagtt |
200 |
Q |
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| T |
49330763 |
tactaacataaacctaagattataattttcctttgtaacttttccacactgttttgctaaattttacatataaaaaacagcgaaattgttcaattgagtt |
49330664 |
T |
|
| Q |
201 |
gcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgcttatgattccgct |
300 |
Q |
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| T |
49330663 |
gcttatatttcagtttcaccatccaatttgattctcaagtctgtgctacctaccgattcggaaaaaatgtagagcatcacgatttgcttctg----tgcc |
49330568 |
T |
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| Q |
301 |
atttcagcttcatcaatttcataga |
325 |
Q |
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|||| |||||||||||||||||||| |
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| T |
49330567 |
attttagcttcatcaatttcataga |
49330543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 191 - 324
Target Start/End: Original strand, 4660393 - 4660526
Alignment:
| Q |
191 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
290 |
Q |
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| T |
4660393 |
cagttgagttgcttatattacaacttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
4660492 |
T |
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| Q |
291 |
tgattccgctatttcagcttcatcaatttcatag |
324 |
Q |
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| T |
4660493 |
tgattccgctattttagcttcatcaatttcatag |
4660526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 191 - 321
Target Start/End: Original strand, 20558 - 20688
Alignment:
| Q |
191 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgtagagcatcacgatttgctta |
290 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||| |||||||||| || |||| |||||| ||||||||||||||||||| ||||||||||| |
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| T |
20558 |
cagtggagttgcttatattacaacttccccatccaatttgataatcaagtctgggccacctcctgatttgggaaaaatgtagagcatcccgatttgctta |
20657 |
T |
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| Q |
291 |
tgattccgctatttcagcttcatcaatttca |
321 |
Q |
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| T |
20658 |
tgattccgctattttagctttatcaaattca |
20688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 7691 - 7771
Alignment:
| Q |
191 |
cagttgagttgcttatattacagcttccccatccaatttgattatcaagtctgtgctacctgctgattcgggaaaaatgta |
271 |
Q |
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|||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
7691 |
cagttgagttgcttatattacaacttccccctccgatttgattatcaagtctgtgctacctcctgattcaggaaaaatgta |
7771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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