View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6863A_low_78 (Length: 329)

Name: NF6863A_low_78
Description: NF6863A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6863A_low_78
NF6863A_low_78
[»] chr4 (1 HSPs)
chr4 (4-323)||(35894571-35894890)
[»] chr1 (5 HSPs)
chr1 (274-318)||(2436015-2436059)
chr1 (276-318)||(2435909-2435951)
chr1 (274-307)||(10378858-10378891)
chr1 (274-306)||(17470480-17470512)
chr1 (278-318)||(35117890-35117930)
[»] chr7 (2 HSPs)
chr7 (276-318)||(19265786-19265828)
chr7 (274-318)||(19266419-19266463)
[»] chr3 (2 HSPs)
chr3 (276-318)||(26573120-26573162)
chr3 (276-318)||(45620951-45620993)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 4 - 323
Target Start/End: Complemental strand, 35894890 - 35894571
Alignment:
Q  4 ctgaagtgacaaaagaggataacaaacattttctgatacaaacaggatctaataatcaaaatgaatacttatactctaaaatctttaaagtcaatgaaaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35894890 ctgaagtgacaaaagaggataacaaacattttctgatacaaacaggatctaataatcaaaatgaatacttatactctaaaatctttaaagtcaatgaaaa 35894791  T
Q  104 actttttggcaagaaaagtgactgttatataaaggcttcagaggttttaaaaacaaaattatgatggtaaaatggaaaatgataaagacttagtattata 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35894790 actttttggcaagaaaagtgactgttatataaaggcttcagaggttttaaaaacaaaattatgatggtaaaatggaaaatgataaagacttagtattata 35894691  T
Q  204 gattgtcgactccatgttggttggtatgagaagcttgatggagtatttaagtttggtcatatgaaggtttgtgcaacggtaaagttgttgtcccgtgact 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  35894690 gattgtcgactccatgttggttggtatgagaagcttgatggagtatttaagtttgctcatatgaaggtttgtgcaacggtaaagttgttgtcctgtgact 35894591  T
Q  304 gaaaagtcgcgggtttaaga 323  Q
    ||||||||||||||||||||    
T  35894590 gaaaagtcgcgggtttaaga 35894571  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 2436059 - 2436015
Alignment:
Q  274 gtgcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 318  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||||    
T  2436059 gtgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 2436015  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 2435951 - 2435909
Alignment:
Q  276 gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 318  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||    
T  2435951 gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 2435909  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 10378891 - 10378858
Alignment:
Q  274 gtgcaacggtaaagttgttgtcccgtgactgaaa 307  Q
    |||||||||||||||||||||| |||||||||||    
T  10378891 gtgcaacggtaaagttgttgtcacgtgactgaaa 10378858  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 17470512 - 17470480
Alignment:
Q  274 gtgcaacggtaaagttgttgtcccgtgactgaa 306  Q
    |||||||||||||||||||||| ||||||||||    
T  17470512 gtgcaacggtaaagttgttgtcacgtgactgaa 17470480  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 35117930 - 35117890
Alignment:
Q  278 aacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 318  Q
    |||||||||||||||||| ||||||||||| ||| ||||||    
T  35117930 aacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 35117890  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 19265786 - 19265828
Alignment:
Q  276 gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 318  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||    
T  19265786 gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 19265828  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 19266419 - 19266463
Alignment:
Q  274 gtgcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 318  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||    
T  19266419 gtgcaacggtaaagttgttgtcatgtgactgaaaggtcgtgggtt 19266463  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 26573120 - 26573162
Alignment:
Q  276 gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 318  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||    
T  26573120 gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 26573162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 45620993 - 45620951
Alignment:
Q  276 gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 318  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||    
T  45620993 gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 45620951  T

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